Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03334 ATGAGTTTTCAAGATATTCAAAGTGGTTCAAATCCTCCTTCCCGTCGAACCCAGTCGCCATCGCAAGCCGTCGCTGCCGGAATTTTCCAGATCAACACCGCCGTCGGTACTTTCCGGCGACTCGTTGACTCTGTCGGAACCGTTAAAGATACTCCAGAGCACCGTCAGAAACTGCACAATACGAGACAGAGGATATTGCAGCTTGTGAAGGATACATCTGCCAAACTCAAATCCTTGCCTGAAACTAATCGTGATGCTAATGCCAATACTAGTAAGAAAATTGAAGATGCTAAGTTGGCAAGAGATTTCCAAACCACATTGCAAGAGTTTCAGAAAGTTCAACAGCTTGCTTCTGAGCGTGAATCAACTTACACTCCGGCTGCCCCTGCTTCTAACTTACCAACAAGCTCTGGCCCTGGTCATGAATCGATTGAGATAGACCCCGAAAGCCAACCTTTTATCAGAGGGCAGATGAGGCAAGAGATAGTTCTATTGGATAATGAAATATCCTTCAATGAAGCCATGATTGAAGAAAGAGATCAGGGTCTTAGAGAGATAGAAGAGCAAATTGGAGAAGCAAATGAAATATTCAAGGACCTTGCTGTTTTGGTTCATGATCAGGGGATTGTTATTGATGACATTCAATCAAATATAGATACTTCTGCTGGTGCAACAGCTCAAGGTAAGGTCCAGCTTGCCAAAGCTTCCAAAAGTGTGAAATCCAAAAATAAATGGTGTTGGTGGATGCTTTTAATATTTGTGGCAGTCCTGGTCATCGTACTCATTGTACTCCTTGTTTAA 801 0.432 MSFQDIQSGSNPPSRRTQSPSQAVAAGIFQINTAVGTFRRLVDSVGTVKDTPEHRQKLHNTRQRILQLVKDTSAKLKSLPETNRDANANTSKKIEDAKLARDFQTTLQEFQKVQQLASERESTYTPAAPASNLPTSSGPGHESIEIDPESQPFIRGQMRQEIVLLDNEISFNEAMIEERDQGLREIEEQIGEANEIFKDLAVLVHDQGIVIDDIQSNIDTSAGATAQGKVQLAKASKSVKSKNKWCWWMLLIFVAVLVIVLIVLLV 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03334 266 Gene3D - 167 266 - -
Vivi6g03334 266 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 173 235 IPR000727 -
Vivi6g03334 266 PANTHER SYNTAXIN 22 256 IPR045242 -
Vivi6g03334 266 MobiDBLite consensus disorder prediction 1 22 - -
Vivi6g03334 266 SMART tSNARE_6 168 235 IPR000727 -
Vivi6g03334 266 CDD SNARE_Qa 176 234 - -
Vivi6g03334 266 SMART SynN_4 8 122 IPR006011 GO:0016020
Vivi6g03334 266 MobiDBLite consensus disorder prediction 120 143 - -
Vivi6g03334 266 SUPERFAMILY t-snare proteins 19 228 IPR010989 GO:0016020|GO:0016192
Vivi6g03334 266 Pfam SNARE domain 210 261 IPR000727 -
Vivi6g03334 266 Pfam Syntaxin-like protein 25 124 IPR006011 GO:0016020
Vivi6g03334 266 MobiDBLite consensus disorder prediction 120 139 - -
Vivi6g03334 266 Gene3D - 7 131 - -
Vivi6g03334 266 FunFam Syntaxin-22 like 166 266 - -
Vivi6g03334 266 FunFam Syntaxin-22 like 15 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03334 Vivi-Chr6 124779180 124782337 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03334 1 253 SNARE and Associated Proteins AT5G46860 59.073 4.62e-101 294
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03334 - - gmx:100787141 406.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g03334 6 124779180 124782337 Vivi6g03334 6 124779180 124782337 ECH