Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03322 ATGAGCTCTACAAAAGCAAAGAAGAAGCAAACGACAGGAACAACAAGCGAAACGACAACAACAACAACACCACCAACCCAAGAACAGCAACAAACGGCATGGGGAGGAAGATACCTCGGAGTCCGAAGAAGACCATGGGGACGATACGCCGCAGAGATTCGCGATCCTTCGACGAAAGAACGACACTGGTTAGGAACATTCGACACTGCCGAAGAAGCTGCTTTGGCTTACGACAGAGCCGCACGTGGCATGCGAGGGTCACGTGCTAGAACCAATTTTGTTTACGCCGATACACCTCCCGGTTCTTCTGTTACTCCAATCCTCTCCCCTGATCAACAACATCAACAAGAACAAGCTTTTCATGAACTCTCGTTTGTTCTTCAACATGAACCGTTTCCGGTTCAGCATAACCCGGTTCAGTCTCTTGACTCGGTTTCTTTCGTAACATCTTCTGGTAATTACGGTTACGGTGAGGAAAATAATAATTATAATAATAGTATTAATTTTAATAAATATAATCTTCCTCCTCAAGCTCCACTTGCTACATTGGAGGCTAGTATTAATAATAATAATGAAAATTCTCATTTTAACCAACAAGTATTTTTGGACGATGTTGTTGCTTGTAGTAGCAACAGCAACGTTAATTTTAACAACAACATTGAACTTCCTCCTTTGCCACCGGATATTACTAGCTCCGCGTGTTATGATATGGCATTCAACGGCGGTGATAATGATCATGGGTATTATTATTCATCATGGGAGCAGAATGTTGGAGGTGAATGTTATAATAATCAAATGTTGGGTTCGAATGTTGGAGGTGTTGGAGTTACAGAGAATAACGGCGGTGATGGTTTTGATTTCGGAGGCTCTTCATTTTTCTTCTGA 885 0.4215 MSSTKAKKKQTTGTTSETTTTTTPPTQEQQQTAWGGRYLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARGMRGSRARTNFVYADTPPGSSVTPILSPDQQHQQEQAFHELSFVLQHEPFPVQHNPVQSLDSVSFVTSSGNYGYGEENNNYNNSINFNKYNLPPQAPLATLEASINNNNENSHFNQQVFLDDVVACSSNSNVNFNNNIELPPLPPDITSSACYDMAFNGGDNDHGYYYSSWEQNVGGECYNNQMLGSNVGGVGVTENNGGDGFDFGGSSFFF 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03322 294 Gene3D AP2/ERF domain 36 95 IPR036955 GO:0003700|GO:0006355
Vivi6g03322 294 MobiDBLite consensus disorder prediction 1 37 - -
Vivi6g03322 294 SUPERFAMILY DNA-binding domain 37 94 IPR016177 GO:0003677
Vivi6g03322 294 FunFam Ethylene-responsive transcription factor 2 37 95 - -
Vivi6g03322 294 CDD AP2 37 93 IPR001471 GO:0003700|GO:0006355
Vivi6g03322 294 PRINTS Ethylene responsive element binding protein signature 60 76 IPR001471 GO:0003700|GO:0006355
Vivi6g03322 294 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Vivi6g03322 294 MobiDBLite consensus disorder prediction 1 34 - -
Vivi6g03322 294 ProSiteProfiles AP2/ERF domain profile. 37 94 IPR001471 GO:0003700|GO:0006355
Vivi6g03322 294 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 16 170 - -
Vivi6g03322 294 Pfam AP2 domain 38 86 IPR001471 GO:0003700|GO:0006355
Vivi6g03322 294 SMART rav1_2 37 100 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03322 Vivi-Chr6 124337760 124338932 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03322 21 109 AP2-EREBP Transcription Factor Family AT5G13910 76.404 1.66e-44 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi6g03322 AP2 1.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03322 K09286 - gmx:100815668 184.882