Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03315 ATGCGAGATACTAGGCGTTTTGCGATGGATGAACTCTCTCACGCGACAAAGAATTTCACTGACAAAAATTTGATTGGAGAAGGGAAATTCGGTGAGGTTTACAAAGGCTTACTTCAAGATGGGATGCTTGTAGCTATCAAGAAGCGCCGCGGTGTCACTAGTCAGGAATTCGTTGATGAGGTACGCTATCTTTCATCTATTCAACATCGGAATCTAGTTACTCTTATTGGATATTGCCAAGAAAACAATCTACAGTTTCTTATATACGAATACGTGCCTAATGGAAGCGTCTCCAGTCACTTGTATGGCGCTAGTCAACAACCACGAGAGAGGCTAGAATTCAAGCATAGACTCTCAATAGCTCAAGGTGCAGCTAAAGGTTTGGCTCATCTTCATTCTTTGAGTCCGCGTTTGGTGCATAAGAATTTCAAAACATCTAATGTTCTTGTCGATGAAAACTTCATTTCTAAGGTCGCGGATGCAGGGCTTCGTAATTTTCTAGGGAGAGTTGAAATTGTAGGCTCGTCTTCTCAAGTGGCGTCAGATGAAATATTTCTTGCACCTGAGGTGAGAGAGTTCCGACAATTTTCTGAGAAGAGCGATGTGTATAGCTTTGGTGTATTTTTGTTGGAATTGTTGAGTGGGAAGGAAGCAACAGAATCACCCTCTATAAACACAAGTCAAAATCTGGTCGAATCGGTGCTAAGTAATCAAGACAGTAGCACGATGTCTGCGATCATTGATCAAAGAATGGAAAGTAGATTTACAGCTGAAGGAATGGAAAGCTACATTCTACTGTTAATAAAATGTTTGGATCCTTCAAGTGAAAGAAGACCTTCCATGAGCTACGTCGAAATGGAACTCGACCGAATCCTCGAAAAAGAGATGAACTTAACAACAATGATGGGTGAAGGAACACCAACAGTAACTCTTGGAAGTCAATTATTCAAATCAACTAAATAA 963 0.4071 MRDTRRFAMDELSHATKNFTDKNLIGEGKFGEVYKGLLQDGMLVAIKKRRGVTSQEFVDEVRYLSSIQHRNLVTLIGYCQENNLQFLIYEYVPNGSVSSHLYGASQQPRERLEFKHRLSIAQGAAKGLAHLHSLSPRLVHKNFKTSNVLVDENFISKVADAGLRNFLGRVEIVGSSSQVASDEIFLAPEVREFRQFSEKSDVYSFGVFLLELLSGKEATESPSINTSQNLVESVLSNQDSSTMSAIIDQRMESRFTAEGMESYILLLIKCLDPSSERRPSMSYVEMELDRILEKEMNLTTMMGEGTPTVTLGSQLFKSTK 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03315 320 PIRSF ILK 2 301 - -
Vivi6g03315 320 Gene3D Transferase(Phosphotransferase) domain 1 92 306 - -
Vivi6g03315 320 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 1 91 - -
Vivi6g03315 320 ProSiteProfiles Protein kinase domain profile. 19 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g03315 320 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 4 297 IPR047117 -
Vivi6g03315 320 Gene3D Phosphorylase Kinase; domain 1 1 91 - -
Vivi6g03315 320 FunFam Protein kinase superfamily protein 92 305 - -
Vivi6g03315 320 Pfam Protein tyrosine and serine/threonine kinase 23 287 IPR001245 GO:0004672|GO:0006468
Vivi6g03315 320 SUPERFAMILY Protein kinase-like (PK-like) 5 285 IPR011009 -
Vivi6g03315 320 ProSitePatterns Protein kinases ATP-binding region signature. 25 48 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03315 Vivi-Chr6 124120059 124122415 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03315 5 293 Receptor kinase-like Gene Family AT1G30570 40.136 6.58e-63 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXa Vivi6g03315 PK_Tyr_Ser-Thr 2.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03315 - - tpra:123888647 599.356