Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03307 ATGGGTCGTCTTCTTCTAACTCTCTTTCTCCCCTTTCTCATCTTCGCAAATGCCATCAACCCTTCTTCGATTCCCAAAGACGCATTGTCGCTTCTCACCTTCAAACATTTAGTTTCTTCAGACCCTTCAAATCTTCTCTCCGGTTGGAGTTACCGCTCCTCCTCCACACTCTGCCGCTGGTATGGAGTCACGTGCGGCGGAGTTGGAAGAGGAAAAGGAAGAGTGGTTTCCCTTAATGTGACTGGTCTTTGCGGCGGTGAACTGGCGTCTTCCATTGGAGAGTTATCCGAGCTTCGAGTTTTGTCGATTCCTGGAAACATGTTCTCCGGCGAAATTCCGGTGAGTTTGATGAATCTCCGGGAGCTTGAGGTTCTTGAGCTTCAAGGTAACAACTTTTCAGGGAAGGTTTCTTTACAAATGAGTTATCTTGAATCGCTTAAACATGTTAATCTATCTGGTAATGCTTTTTCTGGTCGTATTCCAAATGGGTTTATTTTTTCTAGGAATGTGAAAATTGTTGATTTGTCTGATAATCAATTTTCTGGTTCGATTCCTGTGAATGATTCTGTTGGTTGTGATTCTTTGAGGCATTTGAAACTGTCTGATAATTTTTTGACTGGTGAGATTCCACCTCAAATTGGGAAATGTAGAAACTTGAGGACCCTTTTGGTGGATGGGAATATATTGGAAGGTAAAATCCCTCTTGAGATTGGGCTTGCGGTCGAACTCCGTGTTCTTGATGTTTCGAGAAACAGTCTCACCGGTAGAATACCGAAACTGTTAGGTAATTGTTTGAAGTTGTCTGTCCTTGTTCTTACTGATTTGTTTGATGATCGCGGCGGTTCTGACGCGGGAAGTTTAGTGGAGGATAAATTTAGAGGTGAATTCAATGCTTTTGTTGGGAATATTCCTCATGCAGTGTTGTCGCTTTCGAGTTTGGAGATTTTGTGGGCCCCGAGAGCGAATCTCGGCGGACGGTTACCTGTTGAATGGGCAGATTCGTCGTGCTCTCTTAGAATACTTAATTTGGCTGAGAATTATGTTACTGGTGTCGTGCCCGAGAGTTTAGGGATGTGTCGGAATTTGACTTTCTTGGACTTGAGTTCTAACAATTTAGTGGGAAATTTGCCGTTGGATCAGCTCCATGTTTCTTGTATGATGTATTTCAACGTAAGCAGGAATAATATGTCTGGTTTGCTGCCAGATTTTCGGAAAGAAACGTGTCGATCGAGTAGTAACGCCTTTGCTGCACTAGAACCTGCGTTTCTAGAATTGGAAGATTTGAATGATAAATACTATAACGTTCGTGTTTTGAGATTTCAAGAGAATGCTTTTGTCGGATTAGGTTTCGTAGAGTCTACTGTCGTTATTCATGACTTCAGCTGGAACAGTTTCGTTGGATCTTTACCGTTGTTCGTTATTGGAGATAATCTTTTTACTGCAAATCGTAACGTATCGTACATGCTGTCTCTGAATAATAATAAATTCAACGGAACTCTTCCGTATCAGCTAGTTTCAAACTGTAATGGGCTCAAGACATTATCGGTTAACATCAGTGTGAACCAACTCTACGGTCAGATTTCTCAAGCATTGTTTCTGAACTGCCCGCATTTGATGAGTTTTGACGCAGCGTACAATCAAATCGATGGATCAATTGGACCTGGTATAGGTGAATTGACATTACTTCGGCGTCTTGATTTGACAGAGAACAAACTATCAGGAGCGGTGCCGAATCAGTTGGGAAATCTACAAAACATGAAATGGTTGCTTCTAGGAGGAAACAATTTAACTGGGGAAATTCCTTACCAGCTTGGTGGATTGACTTCTCTTGTTGTTTTGAACCTGTCTCACAATTCTCTAATCGGAACAATTCCAGAAACCTTGTCGAATACGACAAGTCTTGAAACTATGTTGCTAGATCACAACAATCTTTCTGGGGAAATACCTTTATATGTTGCCGCTCTTTCCAATCTTGTTCATCTCGATGTTTCTTTCAACAATCTTTCTGGTCATATTCCTCATCTTCAACACCCGATTGATTGTGATTCATTTAAAGGGAACAAATACCTGCACTCTTGCCCTGATTCATACTTCGACTCGCCTGCTCCTCCCCCGGTTCCTATTGGAGACAATAATTCGGATAGTTGTAAAAGGAAGAAAGTAAGGACCGTGGTTATCGTGGTGGCCGCTTCTGCTGCTGCGGCTCTATGCACCCTTTTGGTAATAGTGTTGGTGATTCGGTTTAGAAGGAGAAAAATGACTCGAAGAAGCAGCATTAGAAGACGAGAAGTGGTGACTTTTCAAGCTGTTCCAATTGAATTGAGTTATGATAGTGTTGTCAGAGCTGCCGGAAATTTCAGCATCCGTTATCTAATCGGTGCTGGTGGGTTCGGGTCAACTTACAAGGCAGAGCTATTTCCAGGTTTTTTTGTTGCCATTAAGCGGCTTTTGATAGGTAAATTTCAAGGCATACAACAGTTTGAAACAGAAATCAGAACGCTCGGGAGAATTCGACACAAGAATCTCGTAACTCTAATTGGCTATTACGTAGGAAAATCTGAAATGTTGTTGATTTATAATTACCTCTCTGGTGGAAATCTTGAAGCTTTCATACATAGTAGGTCAGGGAAAAACGTGAAGTGGCCGGTTATTTACAAAATAGCGAAAGGTATCGCCGGGGCCCTTGCATACCTTCATTACTCTTGTGTTCCCCGCATAGTTCACCGAGATATCAAGCCTAGCAACATTTTACTCGACGAGAATTTTAATGCCTATCTGTCCGATTTCGGCTTGGCACGTCTGCTTGAAGTATCCGAGACTCATGCAACTACCGACGTGGCAGGCACTTTCGGTTACGTTGCACCTGAATATGCGACCACTTGTAGGGTTTCTGACAAAGCGGACGTCTATAGCTACGGTGTTGTCCTTTTAGAATTGATATCGGGAAGAAGGTCGCTCGATCCGTCATTCTCTAATTACGGAAACGGATTCAATATAGTACCATGGGCGGAGCTTCTAATGACCGAAGATCGTTGTTCTGAGCTTTTTTCATCTGCTTTGTGGGAATCAGGACCAAGAGAAAAGCTGTTCGAGCTTTTAAAGATCGCGTTAACCTGCACAGAAGAAACTCTTTCCATTCGACCGTCGATGAAAGAAGTTCTTGAAAAACTAAAACAGTTGAAAAGTTGA 3189 0.4233 MGRLLLTLFLPFLIFANAINPSSIPKDALSLLTFKHLVSSDPSNLLSGWSYRSSSTLCRWYGVTCGGVGRGKGRVVSLNVTGLCGGELASSIGELSELRVLSIPGNMFSGEIPVSLMNLRELEVLELQGNNFSGKVSLQMSYLESLKHVNLSGNAFSGRIPNGFIFSRNVKIVDLSDNQFSGSIPVNDSVGCDSLRHLKLSDNFLTGEIPPQIGKCRNLRTLLVDGNILEGKIPLEIGLAVELRVLDVSRNSLTGRIPKLLGNCLKLSVLVLTDLFDDRGGSDAGSLVEDKFRGEFNAFVGNIPHAVLSLSSLEILWAPRANLGGRLPVEWADSSCSLRILNLAENYVTGVVPESLGMCRNLTFLDLSSNNLVGNLPLDQLHVSCMMYFNVSRNNMSGLLPDFRKETCRSSSNAFAALEPAFLELEDLNDKYYNVRVLRFQENAFVGLGFVESTVVIHDFSWNSFVGSLPLFVIGDNLFTANRNVSYMLSLNNNKFNGTLPYQLVSNCNGLKTLSVNISVNQLYGQISQALFLNCPHLMSFDAAYNQIDGSIGPGIGELTLLRRLDLTENKLSGAVPNQLGNLQNMKWLLLGGNNLTGEIPYQLGGLTSLVVLNLSHNSLIGTIPETLSNTTSLETMLLDHNNLSGEIPLYVAALSNLVHLDVSFNNLSGHIPHLQHPIDCDSFKGNKYLHSCPDSYFDSPAPPPVPIGDNNSDSCKRKKVRTVVIVVAASAAAALCTLLVIVLVIRFRRRKMTRRSSIRRREVVTFQAVPIELSYDSVVRAAGNFSIRYLIGAGGFGSTYKAELFPGFFVAIKRLLIGKFQGIQQFETEIRTLGRIRHKNLVTLIGYYVGKSEMLLIYNYLSGGNLEAFIHSRSGKNVKWPVIYKIAKGIAGALAYLHYSCVPRIVHRDIKPSNILLDENFNAYLSDFGLARLLEVSETHATTDVAGTFGYVAPEYATTCRVSDKADVYSYGVVLLELISGRRSLDPSFSNYGNGFNIVPWAELLMTEDRCSELFSSALWESGPREKLFELLKIALTCTEETLSIRPSMKEVLEKLKQLKS 1062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03307 1062 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Vivi6g03307 1062 SUPERFAMILY RNI-like 78 398 - -
Vivi6g03307 1062 SUPERFAMILY L domain-like 300 678 - -
Vivi6g03307 1062 Gene3D Ribonuclease Inhibitor 291 447 IPR032675 -
Vivi6g03307 1062 Gene3D Ribonuclease Inhibitor 85 275 IPR032675 -
Vivi6g03307 1062 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 188 275 - -
Vivi6g03307 1062 ProSiteProfiles Protein kinase domain profile. 786 1060 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g03307 1062 Pfam Protein kinase domain 791 989 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g03307 1062 Pfam Leucine Rich Repeat 243 264 IPR001611 GO:0005515
Vivi6g03307 1062 Pfam Leucine Rich Repeat 194 216 IPR001611 GO:0005515
Vivi6g03307 1062 ProSitePatterns Serine/Threonine protein kinases active-site signature. 906 918 IPR008271 GO:0004672|GO:0006468
Vivi6g03307 1062 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 750 861 - -
Vivi6g03307 1062 PANTHER LEUCINE RICH REPEAT KINASE 2 455 1061 - -
Vivi6g03307 1062 SUPERFAMILY Protein kinase-like (PK-like) 762 1057 IPR011009 -
Vivi6g03307 1062 Gene3D Ribonuclease Inhibitor 23 84 IPR032675 -
Vivi6g03307 1062 Gene3D Ribonuclease Inhibitor 453 697 IPR032675 -
Vivi6g03307 1062 Gene3D Transferase(Phosphotransferase) domain 1 862 1061 - -
Vivi6g03307 1062 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 430 700 - -
Vivi6g03307 1062 Pfam Leucine rich repeat 585 644 IPR001611 GO:0005515
Vivi6g03307 1062 CDD STKc_IRAK 792 1060 - -
Vivi6g03307 1062 FunFam Leucine-rich repeat receptor-like protein kinase 25 186 - -
Vivi6g03307 1062 ProSitePatterns Protein kinases ATP-binding region signature. 792 820 IPR017441 GO:0005524
Vivi6g03307 1062 SMART serkin_6 786 1061 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g03307 1062 Gene3D Phosphorylase Kinase; domain 1 747 861 - -
Vivi6g03307 1062 PRINTS Leucine-rich repeat signature 607 620 - -
Vivi6g03307 1062 PRINTS Leucine-rich repeat signature 362 375 - -
Vivi6g03307 1062 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 862 1062 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03307 Vivi-Chr6 124015262 124019880 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03307 27 1061 Receptor kinase-like Gene Family AT3G02130 43.035 0.0 786
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XV Vivi6g03307 Pkinase 6.2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03307 - - cam:101512699 1595.1