Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03296 ATGTCCATCTTGCCCTCTCAAACCCAATCGCCATCTTCATCTTCTTCGTCTTTACCAATCCCTAACCCTAATTCACAACATGGAGTTTCAGAAATCGCCTCTTCTCTTTCCCCTCAACTCAACCATGCTCTCGGATCTCTCCAGATCTCCGACTTTCCAGGTCCTTCAACTCCAGCTGCAGAAGATCATGGTAGACCCTCCGAAAAGGTGACGGAACTAGAGTCTTCAAGTGGTATGAAGGCACCTCAGAGAAACTCTAGATCACATTCTAGGAGTCACTCAGGAAGACGGACAGTTGGACTCTCCCAGTCTGAGGGGATGACAACGGGAACAGTTTCTTCTCATAGAAATCAACAGGCTACTGGATCCGTGTATTCTCAAGGGAGCAGCCCTTTCGCAGGAAGGAAATCTCAGATGGCGAATGGCAATCACTTGCTCAACTTTCAATATGATCCAATATCCCGTTCTCAACAAAGGGGTCCTCCCCCTCCCCCTCCAGCAAGAAGGCAGCGGAAGAGAAGACCATACAATAGAGATTTGTTTTTGCAGGCGAATTTCAAATTCATGGTGCTAGATTCTGGAAATTATTCCCCTGAGTCAATGGATCCAGATAAAATGTTGTCGTGGGAAGATATTATATGTGTGACATATTCGACCCCCTCTCCTATTCAGTGTCCAATTTGTTTGGAGCACCCCTTGTGTCCCCAAATAACCTCATGTGGACACATTTTTTGTTTCCCATGTATTCTACAATACTTGTTGTTGGGTGAAGAAGATCATAAAGGTGATATCTGGAAGAGGTGTCCACTGTGCTTTGTAATGATATCTGTCAAGGACTTATATACAGTGCACATCACAAATGTCAAACAGTATCAAGTAGGAGATAATATTGAGTTCACTTTCTTAACGAGGAAGAAGGATTCATTTACTCTTTCGCATAAAAATAAACAAGAGACTGATAACTCATCATGTGGCCTAGGAGATGTATGTGATCCCTTTTCTAAGCTCACACTCACATTAGATGTAGATCTCTCAGTGAGACATGCAATATCAGATCTAGATGGTTGGCTGGCCAGAGCTGATTCAGGTCTTGTCGACGACCTGGAGAAGCTTCCATATGTTAGTGCTGCAATGCAACAACTAAAACAGAGAAAGAAGTATTGGAATGAGCTCAGGGCTTCTAACAGTGAAAAATCTTCTAACCTCGTTGATAATGCACTCCAGGCACCATCAATATCTGCAAATGCTGTGGATACTGATGATGAAAGCTGTTCTAATGGATCAAGAACTTCCTCTACTGAGTTCCCCGATCAAAGCAAGGTTGTAATATTGGATAAATCAACTGCTGGAGCCTGTCAGGATGAAATTTTGGACCTGGAAAAGATACTAATAGAGCCGGAAATGAACTTGTCTTCTTCTTACGAGGAGAAAAAATGTATTCAAGGCCATTCAAATGGCATTGGAGATGCAAAGGAAAATGACTCTTACAATTTTTATCAGGCTGCTGATGGGCAACATCTAATTCTTCATCCTTTGAACACCAAGTGTTTACTGCACCATTACGGTAGCTATGATAAGCTCCCTCACAGAATAAGTGGAAGGATTCTACAATTGGAGACAGTTACTCAATCTGAGGCAGTGAGGAGGCGGTATCGATTTTTAAGTCATTTTCCGTTAACCACGACTTTTCAGCTTTGTGAAGTTGATTTGAGTGAGATTTTGCCTGCTGAAGCACTGGCCCCATTTTTGGATGAAATAAAGAACCGTGCTAACCAGAGGAAGCAACTTGCAAAGAAGGAACTGAAAGAAAAATTAAAGGCTGAAGCTACTTCTAATTATGCTCTTTCCATGTCAACCCATTATCAGTTTGTTTCTCGTGATGATCCTCCCACGTTCTCCATGGATGACTTTGAAGCTCTAGGAAATTCCGCTCTGTCATCAAGTCCTCCAGTTGTTGGTGAGAGGAAATTGTTTTCAAGTGTGACTAGGCTTGGTTTTGCTGCTGCTCATGATTCTCCATCCTTTCAAGCTCAAGAAACTAGCAATCTAAACAATAACAATTCGATTGCTGATTCTTCTGGTACCGCAGGTTTGAGGAACGGGGAGACACTATCATACTCCAACGTCATATCCAGAGCAGAATCTAATGGAAGTTCGAATGCACCGAAGACAAATGACTCAGGAAAGAAGGGAAAGAAACCAAATCGAGTTCTTCTGTCAACAGCTGGTGGCAGGCGTTATTGA 2244 0.4265 MSILPSQTQSPSSSSSSLPIPNPNSQHGVSEIASSLSPQLNHALGSLQISDFPGPSTPAAEDHGRPSEKVTELESSSGMKAPQRNSRSHSRSHSGRRTVGLSQSEGMTTGTVSSHRNQQATGSVYSQGSSPFAGRKSQMANGNHLLNFQYDPISRSQQRGPPPPPPARRQRKRRPYNRDLFLQANFKFMVLDSGNYSPESMDPDKMLSWEDIICVTYSTPSPIQCPICLEHPLCPQITSCGHIFCFPCILQYLLLGEEDHKGDIWKRCPLCFVMISVKDLYTVHITNVKQYQVGDNIEFTFLTRKKDSFTLSHKNKQETDNSSCGLGDVCDPFSKLTLTLDVDLSVRHAISDLDGWLARADSGLVDDLEKLPYVSAAMQQLKQRKKYWNELRASNSEKSSNLVDNALQAPSISANAVDTDDESCSNGSRTSSTEFPDQSKVVILDKSTAGACQDEILDLEKILIEPEMNLSSSYEEKKCIQGHSNGIGDAKENDSYNFYQAADGQHLILHPLNTKCLLHHYGSYDKLPHRISGRILQLETVTQSEAVRRRYRFLSHFPLTTTFQLCEVDLSEILPAEALAPFLDEIKNRANQRKQLAKKELKEKLKAEATSNYALSMSTHYQFVSRDDPPTFSMDDFEALGNSALSSSPPVVGERKLFSSVTRLGFAAAHDSPSFQAQETSNLNNNNSIADSSGTAGLRNGETLSYSNVISRAESNGSSNAPKTNDSGKKGKKPNRVLLSTAGGRRY 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03296 747 PANTHER RING FINGER 10 FAMILY MEMBER 68 747 IPR039739 -
Vivi6g03296 747 MobiDBLite consensus disorder prediction 1 138 - -
Vivi6g03296 747 SMART ring_2 225 271 IPR001841 -
Vivi6g03296 747 MobiDBLite consensus disorder prediction 677 725 - -
Vivi6g03296 747 MobiDBLite consensus disorder prediction 677 747 - -
Vivi6g03296 747 Coils Coil 583 607 - -
Vivi6g03296 747 CDD RING-HC_RNF10 223 280 - -
Vivi6g03296 747 ProSitePatterns Zinc finger RING-type signature. 240 249 IPR017907 -
Vivi6g03296 747 MobiDBLite consensus disorder prediction 414 434 - -
Vivi6g03296 747 MobiDBLite consensus disorder prediction 1 53 - -
Vivi6g03296 747 MobiDBLite consensus disorder prediction 153 175 - -
Vivi6g03296 747 Pfam Zinc finger, C3HC4 type (RING finger) 225 271 IPR018957 GO:0046872
Vivi6g03296 747 MobiDBLite consensus disorder prediction 71 85 - -
Vivi6g03296 747 SUPERFAMILY RING/U-box 216 278 - -
Vivi6g03296 747 ProSiteProfiles Zinc finger RING-type profile. 225 271 IPR001841 -
Vivi6g03296 747 FunFam RING finger protein 10 218 286 - -
Vivi6g03296 747 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 215 325 IPR013083 -
Vivi6g03296 747 MobiDBLite consensus disorder prediction 95 138 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03296 133 697 C3H Transcription Factor Family AT3G26730 55.938 0.0 624
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03296 K26979 - gmx:100798764 1091.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g03296 6 123766229 123772756 Vivi6g03296 6 123766229 123772756 ECH