Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03286 ATGGAACGTTACACGCTACCCTTACCACAAGGACTTCACAACACTCTCACTACTATACCTTGGACTGAACCACAACAAGAACAACAATCACCTTCATGGTCCACACCTAACTCCGAACCTAAACTCAACACCGACCAAGATATTGCCATTGCTATTGCCATGGCTGGTACTGGTAGTAGTACTACCTCTCTCCCTTTCTTCAAACCCGAACCTGATAACTTCTACAACCTCAACTCCGCCACTACAACAACCAACAACAGCAACAGCAACAACGTTGTTCCGTTTATGTCAAATCCGAATTCTACTAATGATAATTTTCTCATGCACCAAAACACAAACACCTTGGATTCAATTTCAAATCCACACTCTTTTTTCCACAACAACAACTACTTCTTCAACAATAGCAACAGCAATAATAATCCTTTTGAATTGGGATTTGATAATGGATTCTTTATGGGAAACAACAACAACGCCGCTTCGAATTCACCTGTTTTTATGGGTGGGTCCCTCGACCTGAGTTCCGCTTCCGAGTTTCCACCGAGTCTTGAACTCGATGCTTCTGTAGCTCCTTTCAGTGCTTCGTTTTCTATGCCTCTTGACCTGTCTCAACCGCAAACTCAACAACAGCAGCAGCAGCAGCAACAACAACAACAACAGCCGACGACGTTGTTTCAGAAGCGGCGAGGGGCGTTGGAGATTCCGAGGTTGGAGACGGTGGGGAACAAGAAGAAGAGGAAAGTGGAGAAGAAGTGGGAAGAAGATGGAAATGGTGGCGGTGAGGATGATGTTGAGGATTTTTCTGAGCTGAATTATGATTCTGATGAGAATGGAAATGATTTGAACAATTCCAATGGGACTGTTGTTACTGGTGGAGATCAGAAGGGGAAGAAGAAGAAGGGGCTTCCTGCCAAAAATCTCATGGCGGAGAGGCGGAGGAGGAAGAAACTCAATGATAGGCTGTACATGCTTAGGTCTGTTGTGCCAAAGATTAGCAAGATGGATAGGGCTTCAATACTTGGTGATGCAGTGGACTACTTGAAGGAGCTACTGCAGCGGATTAATAATCTTCATAACGAACTGGAATCAACTCCTCCTGGATCATTGATGCAACCTTCTGCAAGTGCAAGCTTTCACCCGTTGACACCCACTCCGCCGACCCTTCCTTGCCGAGTCAAGGAAGATCTATATCCTGGTGACTTGCTAAGCCCCAAAAACCAATCTCCTAAGGTGGAAGTTAGGGTAAGGGAAGGGAGAGCTGTCAACATTCATATGTTTTGCACCCGAAGACCAGGACTTTTGCTTTCTACCATGAGGGCTTTGGATAACCTTGGTTTGGATGTTCAACAAGCTGTTATCAGTTGTTTCAATGGTTTTGCTTTGGATGTGTTCAGAGCCGAGCAGCAATGCAGAGAAGGTCAGGATGTTCTCCCTGAGCAAATTAAAGCAGTACTTTTGGATTCGGCAGGATATCATGGTTTGCATTGA 1485 0.4512 MERYTLPLPQGLHNTLTTIPWTEPQQEQQSPSWSTPNSEPKLNTDQDIAIAIAMAGTGSSTTSLPFFKPEPDNFYNLNSATTTTNNSNSNNVVPFMSNPNSTNDNFLMHQNTNTLDSISNPHSFFHNNNYFFNNSNSNNNPFELGFDNGFFMGNNNNAASNSPVFMGGSLDLSSASEFPPSLELDASVAPFSASFSMPLDLSQPQTQQQQQQQQQQQQQPTTLFQKRRGALEIPRLETVGNKKKRKVEKKWEEDGNGGGEDDVEDFSELNYDSDENGNDLNNSNGTVVTGGDQKGKKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAVDYLKELLQRINNLHNELESTPPGSLMQPSASASFHPLTPTPPTLPCRVKEDLYPGDLLSPKNQSPKVEVRVREGRAVNIHMFCTRRPGLLLSTMRALDNLGLDVQQAVISCFNGFALDVFRAEQQCREGQDVLPEQIKAVLLDSAGYHGLH 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03286 494 MobiDBLite consensus disorder prediction 230 256 - -
Vivi6g03286 494 MobiDBLite consensus disorder prediction 1 42 - -
Vivi6g03286 494 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 300 349 IPR011598 GO:0046983
Vivi6g03286 494 Coils Coil 343 363 - -
Vivi6g03286 494 CDD bHLH_AtAMS_like 303 369 - -
Vivi6g03286 494 MobiDBLite consensus disorder prediction 196 302 - -
Vivi6g03286 494 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 205 490 - -
Vivi6g03286 494 Pfam Helix-loop-helix DNA-binding domain 307 349 IPR011598 GO:0046983
Vivi6g03286 494 CDD ACT_UUR-ACR-like 422 483 - -
Vivi6g03286 494 SMART finulus 306 355 IPR011598 GO:0046983
Vivi6g03286 494 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 303 369 IPR036638 GO:0046983
Vivi6g03286 494 MobiDBLite consensus disorder prediction 273 290 - -
Vivi6g03286 494 FunFam BHLH transcription factor 296 364 - -
Vivi6g03286 494 MobiDBLite consensus disorder prediction 257 272 - -
Vivi6g03286 494 MobiDBLite consensus disorder prediction 10 42 - -
Vivi6g03286 494 MobiDBLite consensus disorder prediction 196 225 - -
Vivi6g03286 494 Gene3D - 292 363 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03286 Vivi-Chr6 123643497 123646226 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03286 133 466 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 53.846 6.98e-101 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi6g03286 HLH 1.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03286 - - vvo:131609834 791.956