Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03273 ATGATGATGAACGAGGTTGAAGGAAAGAAAGTACTGGCTCAGAATACCAAGCCCTGTGCTTTCATGGCAGCTGTTGAGCCTCGTCAAGTTGAGTACATGAACGTAACCAAAAACACTGTCAACGGATCCGGTCTTCACCACCGGATCTATGGTGATACCTTTGTTACTGCTGCATTTGGAACTGTTCACAGGAGGAAGAGGATGGCTAGACAGAGAAGATCTTCATCTTCTTCTTCTTCTTCCATCATGAACAACAACCTCAGGACTCATCCATCCAACCCTCCACCTCCTCCTCCTACTGCTTCTTCCACTACCATCTCGCAAGTGCCACTTCCTCCAATTCCTCCTCTTTTTACCAAACCACCTTCCCAACAAGTTGAAATTGATCATAAGAGGCTGAGTTTCCTTTTCCAAAAAGAGCTGAAGAACAGTGATGTTAGCTCCCTAAGGAGAATGGTCTTGCCAAAGAAAGCAGCTGAGGCTTTCCTTCCTCACCTTGACTCAAAGGAAGGAATTCTGATCAACATGGATGATATCGATGGTGTTCATGTATGGTGCTTCAAGTACAGGTACTGGCCAAACAATAACAGTAGGATGTATGTGCTTGAAAACACTGGAGACTTTGTGAACTCGCATGGTTTACGCTTGGGAGATACCATTGTGGTTTACCAGGATAATCAGAGTCACAACTATGTGATTGAGGCGAAAAAGGCTCTTGGTCGTGATGGAGATAAGTTTATGGAAGCAACTGTTACAAACAATAGCATCTTTCCTAATGATTTCGAGCTGAACACAAACTTCTTCGATATAACCTATCCTGAAGTAACCTATCCATTTCCTGAAATCAATGACACCATGAATAATCCCATGAATGATAACGGGATGTCGTTTATATATGACACAACAATCTCAAATGACTCACCATTTGATTTTATGAGCGGATCGATGACAAATTACTCGAAGATGGGATCTTTCTCCAAGATGGGAGCTCTTGAAACTTTTGGCTCAGTTGAGAATCTGTCACTTGATGATTTCTACTGA 1041 0.4256 MMMNEVEGKKVLAQNTKPCAFMAAVEPRQVEYMNVTKNTVNGSGLHHRIYGDTFVTAAFGTVHRRKRMARQRRSSSSSSSSIMNNNLRTHPSNPPPPPPTASSTTISQVPLPPIPPLFTKPPSQQVEIDHKRLSFLFQKELKNSDVSSLRRMVLPKKAAEAFLPHLDSKEGILINMDDIDGVHVWCFKYRYWPNNNSRMYVLENTGDFVNSHGLRLGDTIVVYQDNQSHNYVIEAKKALGRDGDKFMEATVTNNSIFPNDFELNTNFFDITYPEVTYPFPEINDTMNNPMNDNGMSFIYDTTISNDSPFDFMSGSMTNYSKMGSFSKMGALETFGSVENLSLDDFY 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03273 346 CDD B3_DNA 135 237 IPR003340 GO:0003677
Vivi6g03273 346 Gene3D - 133 249 IPR015300 -
Vivi6g03273 346 Pfam B3 DNA binding domain 137 233 IPR003340 GO:0003677
Vivi6g03273 346 MobiDBLite consensus disorder prediction 73 89 - -
Vivi6g03273 346 SMART B3_2 137 239 IPR003340 GO:0003677
Vivi6g03273 346 SUPERFAMILY DNA-binding pseudobarrel domain 136 233 IPR015300 -
Vivi6g03273 346 ProSiteProfiles B3 DNA-binding domain profile. 137 239 IPR003340 GO:0003677
Vivi6g03273 346 MobiDBLite consensus disorder prediction 63 122 - -
Vivi6g03273 346 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 61 243 IPR044800 GO:0003700
Vivi6g03273 346 MobiDBLite consensus disorder prediction 90 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03273 Vivi-Chr6 123500909 123504456 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03273 42 346 B3 DNA Binding Superfamily AT3G26790 47.692 4.09e-79 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi6g03273 B3 5.7e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03273 K09287 - gmx:100783961 310.457