Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03268 ATGTTTTCCGTTTTGTCAGAAAAAGCACTTTTTTGCTCTTTGATTTTGTTAGTGTGCCACTTTGCAATCTCGTGCAAAGCCAACCAACAAGGGGAATATCTCAACAAGCTTATTCAATCAAAGAGGTTTCAACAAAAGGATATTTATTCACATGAAGAAGCTAACAATTTAAGTGATTTTGGTGATGAATATGTTGTTTCACATGAACACGATGTTGAACAAGAATTAAGATTGAAGGAAGCTGATAAGGTGAAAGCTTTGCCTGGTCAACCAAAAGGGGTGGATTTTGATCAATTTGCAGGCTATATATCTGTTGATGCAAAAGAGAAACGAAAACTTTTCTACTATTTTGTGGAATCAACTTTGAATTCTTCTACAAAACCTCTTGTTCTATGGCTCAATGGAGGACCTGGATGCTCTTCATTTGGGTATGGAGCCATGCAAGAAATAGGACCTTTTAGAATCAACCGTGATTCAAAAACACTTTCCCTTAATAAATATGCATGGACCAAAGTGGCAAATGTTCTCTTCTTAGAGTCTCCAGCAGGAGTTGGATTTTCTTATTCAGAAAACTCTTCAGATCTTAAAGTTGGTGACAAAAGAACTGCCATAGATTCATACATTTTTCTTCAAAATTGGCTCAAGAGATTTCCACAACATAGCTCTCGCGATTTCTTTATAGTTGGTGAAAGTTATGCTGGTCATTATGTCCCTCAACTAGCATCTTTAATCCAATCAGAAAATAAAAAAAATCGCAATGTGATCAATTTAAAGGGAATTGCGGTTGGAAATGGTTGGATAGATGACAATTTAGGTAAAATAGGTATGTATGATAATTTCTGGATGCATGCTCTAAACTCGGATGAAACCCACAAAGGAATTGAAAAATATTGTCAGTTTAAGAACTCCGACGTGTCAAAGGAATGCCATGGATATTTACAAAAAGCCATTAATGAGATTGGAAATATTGACTTGTATAACATATATGCTCCACTTTGTACAAACACTAGTCACTTTGAAAATGGTTTTGATCCTTGTGCCGATACTACTACGGCTAACTACTTAAATCTACCTCAAGTTCAAGAGGCTCTACATGTTAAAGCCACAGAATGGTTTTCTTGCAATGGGAAAATATATTGGACTGATAGTGCAACAAGTATTCTACCAACTATAAATGAGTTAAGGTCAAGTGGTATAAGCATTTGGATATACAGTGGTGATGTAGATGGTATTGTTCCCACAACTTCATCAAGGTATTCAATAAATTCTTTGAACCTATCGGTACATACGCCATGGCGTCCATGGTATTCAGAAAAAGAGGTGGGAGGATATTTGATTGGTTACGAAGGACTTACACTTATCACAGTTAGAGGAGCTGGGCACATGGTTCCGAGTAACCAACCACAAAGGGCACTAACTATGATCTCATCTTTCCTTCAAGGAATACTTCCTCCCTAA 1458 0.3669 MFSVLSEKALFCSLILLVCHFAISCKANQQGEYLNKLIQSKRFQQKDIYSHEEANNLSDFGDEYVVSHEHDVEQELRLKEADKVKALPGQPKGVDFDQFAGYISVDAKEKRKLFYYFVESTLNSSTKPLVLWLNGGPGCSSFGYGAMQEIGPFRINRDSKTLSLNKYAWTKVANVLFLESPAGVGFSYSENSSDLKVGDKRTAIDSYIFLQNWLKRFPQHSSRDFFIVGESYAGHYVPQLASLIQSENKKNRNVINLKGIAVGNGWIDDNLGKIGMYDNFWMHALNSDETHKGIEKYCQFKNSDVSKECHGYLQKAINEIGNIDLYNIYAPLCTNTSHFENGFDPCADTTTANYLNLPQVQEALHVKATEWFSCNGKIYWTDSATSILPTINELRSSGISIWIYSGDVDGIVPTTSSRYSINSLNLSVHTPWRPWYSEKEVGGYLIGYEGLTLITVRGAGHMVPSNQPQRALTMISSFLQGILPP 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03268 485 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 82 468 IPR001563 GO:0004185|GO:0006508
Vivi6g03268 485 ProSitePatterns Serine carboxypeptidases, serine active site. 227 234 IPR018202 GO:0004185
Vivi6g03268 485 PRINTS Carboxypeptidase C serine protease (S10) family signature 451 464 IPR001563 GO:0004185|GO:0006508
Vivi6g03268 485 PRINTS Carboxypeptidase C serine protease (S10) family signature 213 238 IPR001563 GO:0004185|GO:0006508
Vivi6g03268 485 PRINTS Carboxypeptidase C serine protease (S10) family signature 165 177 IPR001563 GO:0004185|GO:0006508
Vivi6g03268 485 PRINTS Carboxypeptidase C serine protease (S10) family signature 178 188 IPR001563 GO:0004185|GO:0006508
Vivi6g03268 485 Gene3D - 387 481 - -
Vivi6g03268 485 Gene3D alpha/beta hydrolase 76 343 IPR029058 -
Vivi6g03268 485 Pfam Serine carboxypeptidase 88 481 IPR001563 GO:0004185|GO:0006508
Vivi6g03268 485 Gene3D - 346 379 - -
Vivi6g03268 485 FunFam Carboxypeptidase 343 482 - -
Vivi6g03268 485 ProSitePatterns Serine carboxypeptidases, histidine active site. 451 468 IPR033124 GO:0004185
Vivi6g03268 485 FunFam Carboxypeptidase 78 335 - -
Vivi6g03268 485 FunFam Carboxypeptidase 387 481 - -
Vivi6g03268 485 SUPERFAMILY alpha/beta-Hydrolases 84 482 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03268 Vivi-Chr6 123203493 123205837 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03268 354 481 Calmodulin-binding Proteins AT2G22960 30.303 2.57e-13 66.6