Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03260 ATGTCGTTTCCTTGTGACTACTGCGACACAAGAAACGCGGTTCTATATTGCAAACCAGACTCCGCGAAACTCTGCTTAGTTTGCGACCAGCACGTGCACTCTGCTAACGCACTCGCACTCAAGCACGTGCGTTTTCAGATTTGTCAAAACTGTAAAAACGACGCCGCTTCGGTTCGTTGCTTCACCGATAACCTAGTTCAATGCCTCCGCTGCGATTGGGATGCTCACGGCGGTGACTCCTCCTCTTCTTCTTCTCATCACAACAACCACAACCGCCGCCGTCTGGAAGGTCTTACCGGTTGTCCTTCCGTTAACGAGATTGTCATTGCGTTGGGGCTTGATTTGAAGCCGAACGATTCCGTTTTTGTGGCGGATTTGGAAGGTCCGGTTGTTCCGGTTGTTCAGAATAGAGATGAGTTGTATGAACAAGTGGCGGAAGTTGCGAAGAGAAGGAGGAATTTGGATGGTGAAAATGATTGTAGATTCAGTGATTGTAGTAATGAAGTTGATGATTTGTTGTTGCTTCAGCAAACTCCGTTTACTTCCTTGCTCAATTTTTCACCTGAATTTGACGTCGGCGCTAAGAAAAGTAGTAACGATTATGGAAATGAATCTGGTGTTCTTCTATGGAATCGTAACCCTACGTATCAGCCTCCTCAGGTCTGGGATTTTCAATTACAGAAATCAAGAGATATGACATATGATGGTGTAGAAGTAACTTCTTTATCAGTTCCAAAATTATTGCAGGATGTGCATAATAAGAATTATTCAACACTTGGTGATGATTTTCTATCAAGAAATAATCATTCGGATCAGTCATCATCAAGCCATGTGAAGAAGAAAGTAGAAAGCAACAAGAAAATTAGAGATGGGTTACCAACTGAGTCCAAATTAGTTGAATCCATAACATACAGTGGTGCAGATAATGTACCAGTTATGGAGTATCTTTTGAGTGGGAGTGAAAATGTGAGCAACATAAATGGCAAGGGTAACTTGGAGGAGCAAGTAAGGAATAGAGGGGATGCCATGTTACGATATAAAGAGAAGAAGAAAACTCGAAGGTTTGACAAGCACATTCGATATGAGTCAAGGAAGGCTAGGGCTGATACGAGAAAGAGAGTGAGAGGGAGATTTGTTAAGGCAGGTGATGATGACATTCAAGAAGGATGA 1170 0.4274 MSFPCDYCDTRNAVLYCKPDSAKLCLVCDQHVHSANALALKHVRFQICQNCKNDAASVRCFTDNLVQCLRCDWDAHGGDSSSSSSHHNNHNRRRLEGLTGCPSVNEIVIALGLDLKPNDSVFVADLEGPVVPVVQNRDELYEQVAEVAKRRRNLDGENDCRFSDCSNEVDDLLLLQQTPFTSLLNFSPEFDVGAKKSSNDYGNESGVLLWNRNPTYQPPQVWDFQLQKSRDMTYDGVEVTSLSVPKLLQDVHNKNYSTLGDDFLSRNNHSDQSSSSHVKKKVESNKKIRDGLPTESKLVESITYSGADNVPVMEYLLSGSENVSNINGKGNLEEQVRNRGDAMLRYKEKKKTRRFDKHIRYESRKARADTRKRVRGRFVKAGDDDIQEG 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03260 389 CDD Bbox1 47 76 - -
Vivi6g03260 389 Coils Coil 137 157 - -
Vivi6g03260 389 Pfam CCT motif 339 381 IPR010402 GO:0005515
Vivi6g03260 389 ProSiteProfiles CCT domain profile. 339 381 IPR010402 GO:0005515
Vivi6g03260 389 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Vivi6g03260 389 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 4 383 - -
Vivi6g03260 389 SMART bboxneu5 4 47 IPR000315 GO:0008270
Vivi6g03260 389 MobiDBLite consensus disorder prediction 273 289 - -
Vivi6g03260 389 CDD Bbox1_BBX-like 4 47 - -
Vivi6g03260 389 MobiDBLite consensus disorder prediction 259 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03260 Vivi-Chr6 123042325 123044942 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03260 5 383 C2C2-CO-like Transcription Factor Family AT2G33500 35.849 4.49e-66 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Vivi6g03260 CCT 1.9e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03260 - - gmx:100786838 434.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g03260 6 123042325 123044942 Vivi6g03260 6 123042325 123044942 ECH