Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03251 ATGGCTATGAACGGATATGTTGATTATGATTCGATAGATTGTGTTTCTCAATTTCGTGTTGGTTACAGGTTTGATCCAACGGATGATGATCTCATGAGCTTTTATTTGAGGAAGAAGATCTTTAACCAACCACTCACATTTCATGGAATTCTTCAGTTTGATGTGTTCCAAACTGAGCCATGGAGGCTACCAATTGATACAAGAAATTCATTTAGTGATAGGAAGTACTATTTTTTTGATGTGAGGAATGGTAGGTTTGAAAACATGGACATAAGAGCAGCAGGTAATGGCGAATGGAGAATTGTAGAAAAAAGAAAAGAAGTTTCTCTCCGAAGAAGCCGTTACTTCATTGGAAGAAAGAACACTTTTGAGTATTGGAAGATGGAGGGAACACAAGTTGTGAGAAGTGAATGGATGATGGAGGAGTTTCACATCAAGCCAATTCTTCATCCTTACATGATGAAAATCATGATTTTTGTGCTAGATATAGTGACTGAATTTTTTAGCTCAAATTTAATACAGAAGTCAATTTTAGGAGCATATAGAGTCTTTAAGAGGAAGGAGGCAAAGGGTGAGGAGAAAGTTACTACACCAACTGGGAATGATTTAACAATGGAGGGTGAAGATGAATCAGCGAACCCTTCTGCTCCATGA 654 0.3746 MAMNGYVDYDSIDCVSQFRVGYRFDPTDDDLMSFYLRKKIFNQPLTFHGILQFDVFQTEPWRLPIDTRNSFSDRKYYFFDVRNGRFENMDIRAAGNGEWRIVEKRKEVSLRRSRYFIGRKNTFEYWKMEGTQVVRSEWMMEEFHIKPILHPYMMKIMIFVLDIVTEFFSSNLIQKSILGAYRVFKRKEAKGEEKVTTPTGNDLTMEGEDESANPSAP 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03251 217 MobiDBLite consensus disorder prediction 189 217 - -
Vivi6g03251 217 Gene3D NAC domain 27 192 IPR036093 GO:0003677|GO:0006355
Vivi6g03251 217 MobiDBLite consensus disorder prediction 197 217 - -
Vivi6g03251 217 Pfam No apical meristem (NAM) protein 20 145 IPR003441 GO:0003677|GO:0006355
Vivi6g03251 217 ProSiteProfiles NAC domain profile. 18 186 IPR003441 GO:0003677|GO:0006355
Vivi6g03251 217 SUPERFAMILY NAC domain 17 145 IPR036093 GO:0003677|GO:0006355
Vivi6g03251 217 PANTHER NAC TRANSCRIPTION FACTOR 56 19 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03251 Vivi-Chr6 122936990 122937975 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03251 15 145 NAC Transcription Factor Family AT5G04410 31.579 2.26e-20 87.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi6g03251 NAM 4.2e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03251 - - vvo:131614572 450.284