Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vivi6g03250 | ATGGCTATGAACAGATATGTTGATTATGATTCAATAGATTGCGTTTCTCAATTGCCTGTTGGATACAGGTTTGATCCCACAGATGATGATCTCATAAGCTTTTATCTGAGAAAGAAGATCTCCAAGCAACCTCTTCCACTTCATGGAATTCTTCAGTTTGATGTGTTCCAAACTGAACCATGGATGCTACCATTTGATACTAGAAATTCTTTTGCTGATAGGAGGTACTATTTTTTTGATTTGAGGAACGCTAGGTTTGAGAACATGGAAATAAGAGGAGCGGGTAATGGTGAATGGAGAGTTGTAGAAAAAAGAAAAGAAGTTTCTCTCAGAAGAAGCATTTACTTCGTAGGGAGTAAGTTCACTTTTGAGTATTGGAAGATGGAGGGAACACAACTTGTGAAAAGTGAATGGATGATGGAGGAGTTTAGCATCAGTCCAATTCTTCATCCTCACAAGATGTCGTATTTAGGTGCATATCGAGTCTCTAAGAAGAAAGTTACTACTCCAGCTGGGACTAATTCAATAATGGAGGATGAAAATGAATCAGCCAACACTTCTTATCCATGA | 570 | 0.3807 | MAMNRYVDYDSIDCVSQLPVGYRFDPTDDDLISFYLRKKISKQPLPLHGILQFDVFQTEPWMLPFDTRNSFADRRYYFFDLRNARFENMEIRGAGNGEWRVVEKRKEVSLRRSIYFVGSKFTFEYWKMEGTQLVKSEWMMEEFSISPILHPHKMSYLGAYRVSKKKVTTPAGTNSIMEDENESANTSYP | 189 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vivi6g03250 | 189 | ProSiteProfiles | NAC domain profile. | 18 | 165 | IPR003441 | GO:0003677|GO:0006355 | |
Vivi6g03250 | 189 | SUPERFAMILY | NAC domain | 15 | 163 | IPR036093 | GO:0003677|GO:0006355 | |
Vivi6g03250 | 189 | PANTHER | NAC TRANSCRIPTION FACTOR 56 | 18 | 167 | - | - | |
Vivi6g03250 | 189 | Pfam | No apical meristem (NAM) protein | 19 | 144 | IPR003441 | GO:0003677|GO:0006355 | |
Vivi6g03250 | 189 | Gene3D | NAC domain | 27 | 169 | IPR036093 | GO:0003677|GO:0006355 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vivi6g03250 | Vivi-Chr6 | 122900914 | 122901790 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vivi6g03250 | 11 | 155 | NAC Transcription Factor Family | AT3G04070 | 32.667 | 1.43e-23 | 93.6 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | NAC | Vivi6g03250 | NAM | 1.7e-19 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vivi6g03250 | - | - | vvo:131614569 | 355.91 |