Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03250 ATGGCTATGAACAGATATGTTGATTATGATTCAATAGATTGCGTTTCTCAATTGCCTGTTGGATACAGGTTTGATCCCACAGATGATGATCTCATAAGCTTTTATCTGAGAAAGAAGATCTCCAAGCAACCTCTTCCACTTCATGGAATTCTTCAGTTTGATGTGTTCCAAACTGAACCATGGATGCTACCATTTGATACTAGAAATTCTTTTGCTGATAGGAGGTACTATTTTTTTGATTTGAGGAACGCTAGGTTTGAGAACATGGAAATAAGAGGAGCGGGTAATGGTGAATGGAGAGTTGTAGAAAAAAGAAAAGAAGTTTCTCTCAGAAGAAGCATTTACTTCGTAGGGAGTAAGTTCACTTTTGAGTATTGGAAGATGGAGGGAACACAACTTGTGAAAAGTGAATGGATGATGGAGGAGTTTAGCATCAGTCCAATTCTTCATCCTCACAAGATGTCGTATTTAGGTGCATATCGAGTCTCTAAGAAGAAAGTTACTACTCCAGCTGGGACTAATTCAATAATGGAGGATGAAAATGAATCAGCCAACACTTCTTATCCATGA 570 0.3807 MAMNRYVDYDSIDCVSQLPVGYRFDPTDDDLISFYLRKKISKQPLPLHGILQFDVFQTEPWMLPFDTRNSFADRRYYFFDLRNARFENMEIRGAGNGEWRVVEKRKEVSLRRSIYFVGSKFTFEYWKMEGTQLVKSEWMMEEFSISPILHPHKMSYLGAYRVSKKKVTTPAGTNSIMEDENESANTSYP 189
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03250 189 ProSiteProfiles NAC domain profile. 18 165 IPR003441 GO:0003677|GO:0006355
Vivi6g03250 189 SUPERFAMILY NAC domain 15 163 IPR036093 GO:0003677|GO:0006355
Vivi6g03250 189 PANTHER NAC TRANSCRIPTION FACTOR 56 18 167 - -
Vivi6g03250 189 Pfam No apical meristem (NAM) protein 19 144 IPR003441 GO:0003677|GO:0006355
Vivi6g03250 189 Gene3D NAC domain 27 169 IPR036093 GO:0003677|GO:0006355
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vivi6g03250 Vivi-Chr6 122900914 122901790 Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03250 11 155 NAC Transcription Factor Family AT3G04070 32.667 1.43e-23 93.6
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi6g03250 NAM 1.7e-19 No_clan
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03250 - - vvo:131614569 355.91