Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03249 ATGGCTGTGAACGGATATGTTGATTATGATTCGATAGATTGTGCTTCTCAATTTCCTGTTGGATACAGGTTCGATCCAACAGATGATGATCTCATAAGCTTTTATCTGAGGAAGAAGATCTATAAGCAACCTCTTCCACGTCATGGAATTCTTCAGTTTGATGTGTTCCAAACTGAACCATGGATGCTGCCATTTGATACTAGAAACTCTTTCAGTGATAGGAGGTACTATTTCTTTGATTTGAGGAACTATAGGTTTGAAAACACGGAAATAAGAAGAGCTGGTAATGGTGAATGGAGAGTGATAGAAAAACGAAAAGAAGTTTCTCTCAGAAGAAGCATTTACTTCATAGGGAGTAAGTTCACTTTTGAGTATTGGAAGATGGAGGGAACACAACTTGTGAAAAGTAAATGGATGATGGAGGAGTTTCGCATCAGTCCAATTCTTCATCCTCACAGGATGTCGTATTTAGGTGCATATCGAGTCTCTAAGAAGAAAGTTACTACTCGAGTTGTGACTAATTCAATAATGGAGGATGAAAATGAATCAGCCAACACTTCTTCTCCATGA 570 0.3825 MAVNGYVDYDSIDCASQFPVGYRFDPTDDDLISFYLRKKIYKQPLPRHGILQFDVFQTEPWMLPFDTRNSFSDRRYYFFDLRNYRFENTEIRRAGNGEWRVIEKRKEVSLRRSIYFIGSKFTFEYWKMEGTQLVKSKWMMEEFRISPILHPHRMSYLGAYRVSKKKVTTRVVTNSIMEDENESANTSSP 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03249 189 Gene3D NAC domain 27 179 IPR036093 GO:0003677|GO:0006355
Vivi6g03249 189 ProSiteProfiles NAC domain profile. 18 174 IPR003441 GO:0003677|GO:0006355
Vivi6g03249 189 Pfam No apical meristem (NAM) protein 19 145 IPR003441 GO:0003677|GO:0006355
Vivi6g03249 189 PANTHER NAC TRANSCRIPTION FACTOR 56 18 167 - -
Vivi6g03249 189 SUPERFAMILY NAC domain 16 164 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03249 Vivi-Chr6 122889493 122890279 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03249 11 155 NAC Transcription Factor Family AT3G04070 32.667 7.23e-23 92.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi6g03249 NAM 5.3e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03249 - - vvo:131614569 383.645