Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03247 ATGGCTGTTAACAGATATGTCGATTATGATTCGATAGATTGTGTTTCTCAATTGCCTGTTGGATACAGGTTTGATCCAACAGATGATGTTCTCATGAGCTATTATTTGAGGAAGAAGATCTTTAACCAACCTCTTCCACTTCATGGAATTCTTCAGTTTGATGTGTTTCAAACTGAACCATGGATGCTACCTATTGATACAAGAAATTCATTTAGTGATAGAAAATACTATTTTTTTGATCTGAGGAACCGGAGATTTGAAAACATGGGCATAAGAGGAGCTGGTAATGGTGAATGGAGAGTTGTAGAAAAAAAAAAAGAAGTTTCTCTTAAAAGCCTTTACTTTATTGGGAGAAAGAACACTTTTGAGTATTGGAAGATGGAGGGAACACAAGCTGTGAAAAGTGAATGGACGATGGAGGAGTTTCACATCAGTCCAATTGTTCATCCTCACATGATGTCGCATTTAGGGGCATATCGAGTTTTTAAGATGAAGGTGGCAAAGGGTGAGAAGAAAGTTAACACACCATCTGTGATTGATTTAGAAATAGAGGGTGAAGATGAATCAGCCAACCCTTCTTCTCCTTGA 588 0.3759 MAVNRYVDYDSIDCVSQLPVGYRFDPTDDVLMSYYLRKKIFNQPLPLHGILQFDVFQTEPWMLPIDTRNSFSDRKYYFFDLRNRRFENMGIRGAGNGEWRVVEKKKEVSLKSLYFIGRKNTFEYWKMEGTQAVKSEWTMEEFHISPIVHPHMMSHLGAYRVFKMKVAKGEKKVNTPSVIDLEIEGEDESANPSSP 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03247 195 PANTHER NAC TRANSCRIPTION FACTOR 56 18 170 - -
Vivi6g03247 195 SUPERFAMILY NAC domain 15 165 IPR036093 GO:0003677|GO:0006355
Vivi6g03247 195 Pfam No apical meristem (NAM) protein 19 144 IPR003441 GO:0003677|GO:0006355
Vivi6g03247 195 Gene3D NAC domain 27 171 IPR036093 GO:0003677|GO:0006355
Vivi6g03247 195 ProSiteProfiles NAC domain profile. 18 164 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03247 Vivi-Chr6 122849751 122851008 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03247 11 150 NAC Transcription Factor Family AT3G04070 32.192 2.55e-22 90.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi6g03247 NAM 8.8e-20 No_clan