Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03235 ATGGCAGATCCTTCAACCATTTACGAGTTTCTGAAGCAGCAGCAGCAGCAACAACAACCACCAACCTCATCATCTTCAGCTTCACGACCTAGAAAATCAGCAGCACCACCAACAACGAGAACTTTCCAATGCAACTTCTGTTACCGCAAGTTCTACACTTCTCAAGCTCTTGGTGGTCACCAAAACGCTCACAAACTTGAACGAGCTGCTGCAAGATCAAGAACCATCAACCTCAACAACAATGATGTTGTCTCTCTCTCATCATCACCTCAACCACCACAACAACAACCACCACCACTACCGACTCATTTTTCACTCATCAATGGCTCCAACATCTCCAACTCCAAACCCTTGACTGTGTCTGAACATCTTGAACATGGTCATTTCTTTCATCATCCTCATCCTCATCCTCATCCTCATCATCACCATCACTCTTATTGGCAACAGTTCGAAATGGAGTCGTTACAGTTTCAAACACATCATCCTCATCCTCATCATCACCATGTTGCAACAACAACAACAACAACAAACACTCTTCCTATGGTTCATTTCAATCCTTCTGCTGCTTCAACTTCAACTCATCCTCACCATGTTTTCTCCAACAATGCTGCTTCTGCTTCTCCACCTCAACTTGTTGATGCATCTGACCATGTCAATCTTGACCTCACACTTCACTTGTGA 681 0.4405 MADPSTIYEFLKQQQQQQQPPTSSSSASRPRKSAAPPTTRTFQCNFCYRKFYTSQALGGHQNAHKLERAAARSRTINLNNNDVVSLSSSPQPPQQQPPPLPTHFSLINGSNISNSKPLTVSEHLEHGHFFHHPHPHPHPHHHHHSYWQQFEMESLQFQTHHPHPHHHHVATTTTTTNTLPMVHFNPSAASTSTHPHHVFSNNAASASPPQLVDASDHVNLDLTLHL 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03235 226 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 21 226 IPR044246 GO:0009788
Vivi6g03235 226 MobiDBLite consensus disorder prediction 1 39 - -
Vivi6g03235 226 SUPERFAMILY beta-beta-alpha zinc fingers 39 69 IPR036236 -
Vivi6g03235 226 ProSiteProfiles Zinc finger C2H2 type domain profile. 42 69 IPR013087 -
Vivi6g03235 226 MobiDBLite consensus disorder prediction 186 210 - -
Vivi6g03235 226 ProSitePatterns Zinc finger C2H2 type domain signature. 44 64 IPR013087 -
Vivi6g03235 226 Gene3D Classic Zinc Finger 22 91 - -
Vivi6g03235 226 MobiDBLite consensus disorder prediction 186 209 - -
Vivi6g03235 226 MobiDBLite consensus disorder prediction 8 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03235 Vivi-Chr6 122574560 122575240 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03235 40 106 C2H2 Transcription Factor Family AT5G57520 51.471 4.42e-14 65.5