Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03223 ATGGATGGTGGTGACGTTATTGGCCATGGAGTAATGCAAGATAACTCTGAAGCACACGATGGGATTTTTCATGAGAATGGTCGTGTTAACGATGACGGTGAACTGGATTTTGTTAGTGATGGATGCTTGGATGATGTTGAATATGACAACAGAGTTGTTGATGAAGATTCTGAGTTTGAAGATGTTGAATACTATGATGAAGATGCGGAAGATAATGAATTTTACGGATGTGAATACGATGATGAAGATGGAGATGATGATTGCGAATTAGATGGTGATGATTATGATGACGAGATAGGTTCCGGTTATGTTAGTGGACACGAATATTGGAATACAGATTCAAACGACGGTGGAATTTCTGGGGAAGGATCGGAATGGGGTTCGGACAGATTGAATGAATCGATATCTTCAGATCAACTTCCAGACGAATCATTTGTTGTTGACGAGTTTGACGACATTGCAAATATGGACATGTTTAACTTGCAATGTGATGATGTTTCGAAGCTGCAATTTGGAAGTCTGAAAATAGCTTACACATGGTACTGTTGGTTTGCAAAGATGAACGGTTTTGCAGTCCGTAAAGGTCAAGTTATTAGAAAAAAGAGTGGAGATGTTACTCAACAAACATTTCTTTGTAACCTTGCAGGATTTAGGCAAAACAAAGTAGATAATCGCAAACGTGGTCCGAGGCACGAAACCCGGTGTGGATGTGAAGCAAAAATTCGGGTTCATATTGATATAATTTCACACCGTTGGTATGTCACAGTTTTTACCTTTGAGCACAATCATGCAATGTTAAAGGAGAAGCACTGCAGGCTGTTGGCAGGTAATAGGAAGCTTAGTAAGTCAGATAAGATGCAAATTAAGAATTTTGGGAATGCCGGAATCAAAGTAACTCAAATGATTGGTTCATTCGCTAATGCTGCCGGGGGGTATGATAAGGTAGGATTTTTGAAGAAGGATGTACATAATCAAATTGCAAGACAAAGGAAAGAGATGTCTTCTGATGCTAAAGGTGCTGTCAGGTATCTTATTGATCTTCGTGTAATAGATCCATTGATGCTTGTTGCACACACGGTGGGTGCAGATGGAACGTTGCAAAACCTATTTTGGAGCGACGGTGAGAGTCAAAAGAATTATGAACTGTTTGGTGATGTGCTTGCTTTTGATGCTACATACAAGAAAAATAAGTACAGGTGCCCATTTGTTGTTTTTTCTGGTGTTAATCACCACAACCAGACGATTATATTTGCTACTGCCATAGTTTCAAATGAGGTTGAAGGGACATATGTATGGTTGCTGGAGCAGTTTTTGGTTGCAATGAAAGGTAAGACACCTTTATCTGTAATAACGGACGGTGATGTTGCTATGAGAAATGCAATCAGGAAAGTCTTTCCCAACAGTTACCACAGGTTATGTGCATGGCATCTCCTACGAAATGCAATTTCCAACATTAGCAATCCCAATTTCATCCCTGTTTTCAAAAAATTAATGCTTGGTGATCACGATGTTTGGAAATTTGAGAGTATGTGGAATGAAATGTTAGATAGGTTTGGGTTAGAAGATAATAATTGGATCAATGAATTGTACCAGAAAAGGAAGATGTGGGCAACAGCTCATATTAGGGGAAATTTCTTTGCAGGAATAAGAACGACATCGCGGTGCGAAGCATTTCATAGTCATATGGGACAGTTTGTACACTCGAAGATGAATATGACTGATTTTGTTAAGCAGTTCCATAGGTGTGTGGCATATTTTCGATTTAGAGAGGTTCAAGCTGATTTTGAATCCCAATATGGACAGGCAGTGTTGCATACCAATCTTAGGGCGCTTGAGAGGTCAGCATCAAAGCACTGGACAAAAGAGATATTTGAAATGGTACGATCTGTTATGAAAAAGGTAACCTTAACATCTGTATTAGATATTCAAGATATGGCATCAGTTACCATTTATGCGGTGACAAAATACAGAGACGAAGGGCATGGATGGCGTGTTTCCCACTGTCCATCGAATAACGATTTCAGATGCTCGTGTCTTAGAATGGAATCCATTGGGATTCCTTGTGAGCACATTGTTGCTGTGATGGTTTATCTTAATATTGTAGAATTTCCTGAGAATCTTGTGCTGAATCGTTGGTCATTATATGCGAAGGAGTCTATTAGTGGAAGTTATGAAGATGGTTCCCACTACTGGGATTCACATTTGGTTGCTAGACACGCTACTTTGGTGAATCTTAGTAAGGAGGTCGCTGACTTGTCATATATGGATGTTGATGATTACAAAAAATATTTAGAATATCTGACTAATGAACTTTGTAGGCTTAAATCGAAGTACAACAATGAAGATGTTCCAGATAACATACATGTTGAAGAGGAGTTGGTGAATATACTTAACCCTTCATGTTCAAGAAGCAAGGGTTGTGGACCAGGTACTGTTGGTACATCAGAGAGACCCAGGCGGACACAGACGTGTGGGATATGCGGTGCAGCTGGTCACAACAGAAGATGCTGCCCTACTCTTGGAGCAGATGGAGAGCCTCCTGCAGATAGTTCTTTACAATCAGCATCTGTAAGGTTAAGTAATGACTATGGATTTTCAGTTTGA 2604 0.3975 MDGGDVIGHGVMQDNSEAHDGIFHENGRVNDDGELDFVSDGCLDDVEYDNRVVDEDSEFEDVEYYDEDAEDNEFYGCEYDDEDGDDDCELDGDDYDDEIGSGYVSGHEYWNTDSNDGGISGEGSEWGSDRLNESISSDQLPDESFVVDEFDDIANMDMFNLQCDDVSKLQFGSLKIAYTWYCWFAKMNGFAVRKGQVIRKKSGDVTQQTFLCNLAGFRQNKVDNRKRGPRHETRCGCEAKIRVHIDIISHRWYVTVFTFEHNHAMLKEKHCRLLAGNRKLSKSDKMQIKNFGNAGIKVTQMIGSFANAAGGYDKVGFLKKDVHNQIARQRKEMSSDAKGAVRYLIDLRVIDPLMLVAHTVGADGTLQNLFWSDGESQKNYELFGDVLAFDATYKKNKYRCPFVVFSGVNHHNQTIIFATAIVSNEVEGTYVWLLEQFLVAMKGKTPLSVITDGDVAMRNAIRKVFPNSYHRLCAWHLLRNAISNISNPNFIPVFKKLMLGDHDVWKFESMWNEMLDRFGLEDNNWINELYQKRKMWATAHIRGNFFAGIRTTSRCEAFHSHMGQFVHSKMNMTDFVKQFHRCVAYFRFREVQADFESQYGQAVLHTNLRALERSASKHWTKEIFEMVRSVMKKVTLTSVLDIQDMASVTIYAVTKYRDEGHGWRVSHCPSNNDFRCSCLRMESIGIPCEHIVAVMVYLNIVEFPENLVLNRWSLYAKESISGSYEDGSHYWDSHLVARHATLVNLSKEVADLSYMDVDDYKKYLEYLTNELCRLKSKYNNEDVPDNIHVEEELVNILNPSCSRSKGCGPGTVGTSERPRRTQTCGICGAAGHNRRCCPTLGADGEPPADSSLQSASVRLSNDYGFSV 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03223 867 ProSiteProfiles Zinc finger SWIM-type profile. 651 699 IPR007527 GO:0008270
Vivi6g03223 867 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 166 755 IPR031052 GO:0006355
Vivi6g03223 867 Pfam SWIM zinc finger 675 698 IPR007527 GO:0008270
Vivi6g03223 867 Pfam FAR1 DNA-binding domain 180 266 IPR004330 -
Vivi6g03223 867 SMART 26again6 674 701 IPR006564 GO:0008270
Vivi6g03223 867 Pfam MULE transposase domain 386 480 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03223 Vivi-Chr6 122390779 122393468 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vivi6g03223 MULE 3.1e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03223 - - vvo:131598033 1240.33