Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03215 ATGGATGATCAAACTGAGTCATGTTCTTCTAATACATTGGTACAGTGTCGAATATGTCACGATGAAGATTTAGAGTTAAACATGGATACGCCTTGTTCTTGTTCTGGCACATTGCAGTATGCACATAGAATATGTGTGCAAAGATGGTGCAATGAGAAAGGCGATACTACTTGTGAGATTTGCCAACAGCAATTTAAAGGCTATACTGCTCCTCCACAAGCTCCTTTATTCCGCTATAGGGGCAACTGGGAAATTCCTAGAATTGGTTTTAATAATCATCAGCTCATAGCATTGTTTCCTGCTAATCATGAATTTCTAGACTTTGACTTTGAATATTCAGCTTCCTCTAGAAGGAGCCGTCTGTTCATTCGCATTGTTGCCATCATTTTTATTGTTCTGCTTGTTTTACGTCATACACTTTCAATCATATTTATACTCGATGAATTTGAAGAGACTTCCTTGACAGTGATTACGTTGCTAATGTGGGGAGTCACTGGAATAATTGTACCAGTGTATATAATGCTAAAAGCTATTCAACAACTTCAAAACCAGAATCAGAACCCTCTTATGCAACTGCGATCACTTGATGAAAACAACATGAGACAGTCCCAGTTGCGTGTCATCCATATTCAGTGA 636 0.3836 MDDQTESCSSNTLVQCRICHDEDLELNMDTPCSCSGTLQYAHRICVQRWCNEKGDTTCEICQQQFKGYTAPPQAPLFRYRGNWEIPRIGFNNHQLIALFPANHEFLDFDFEYSASSRRSRLFIRIVAIIFIVLLVLRHTLSIIFILDEFEETSLTVITLLMWGVTGIIVPVYIMLKAIQQLQNQNQNPLMQLRSLDENNMRQSQLRVIHIQ 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03215 211 SUPERFAMILY RING/U-box 12 66 - -
Vivi6g03215 211 CDD RING_CH-C4HC3_MARCH 16 62 - -
Vivi6g03215 211 ProSiteProfiles Zinc finger RING-CH-type profile. 8 68 IPR011016 GO:0008270
Vivi6g03215 211 Pfam Protein of unknown function (DUF3675) 67 178 IPR022143 -
Vivi6g03215 211 SMART ringv_2 15 62 IPR011016 GO:0008270
Vivi6g03215 211 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 6 186 IPR033275 -
Vivi6g03215 211 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 67 IPR013083 -
Vivi6g03215 211 Pfam RING-variant domain 16 61 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03215 Vivi-Chr6 122221702 122223524 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03215 16 62 C3H Transcription Factor Family AT2G37950 46.000 3.49e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03215 - - gmx:100784696 238.039