Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03213 ATGGCCTTACAGAACATTGGTGCTGGCAACAGTGATGATGCCTTCTACAGGTACAAGATGCCTAGAATGATCACTAAAATTGAGGGCAGGGGTAATGGCATCAAGACAAACATTGTCAATATGGTGGATATTGCAAAAGCTTTAGCAAGGCCAGCCGCATACACAACTAAGTATTTTGGTTGTGAACTTGGAGCACAATCAAAATTCGATGAGAAAACTGGGACTTCTCATGTTAACGGGGCACATGATACCCCAAAACTTGCTGGTCTGCTCGAGAACTTCATTAAGAAATATGTTCAATGTTACGGTTGTGGAAATCCTGAAACTGAGATTTTAATTACTAGAAATCAGATGATCCAGCTGAAATGTGCTGCTTGTGGCTTTGTGTCTGACGTGGATATGAGAGACAAGCTGACTACTTTCATCATTAAGAACCCACCAGAAACGAAGAAAGGTTCTAAAGACAAGAAGGCCATGAGGAGAGCTGAAAAGGAAAGACTGAAGGAAGGTGAAGCAGCTGATGAGGAGCTGAAAAAGCTGAAGAAAGAGATTGTCAAGAAGAAAGTAGCTCCTAAGGAAGGCACCGCAAAATCTAGCTCTTCAAGAAAGAAAGGAAATGGCTCTGATGAAGATCATTCATCTCCTACTCGAAGCCCAACTGATGAGAAGGACGAGGCTGAAGATGAGGATGATGTGCAGTGGCAAACAGACACATCACTGGAGGCTGCTCGGCAACGAATCCAAGAACAGCTAAGTGCCGTGACAGCTGATATGGTCATGCTCTCAACCAATGAAGCAGAGGAGAAAGCAGCCTCTAAGGTAAGTGACAAACCTAATAATGGCAACTCCATGAACTACAAGACTCTTGTTGCAGAAATCAAAGCTGATTTGAAGAAAGGTGTCAAGGCTAAAGACTTGGTGGCCCACTGGGCAACACTTCCTGTTTCTCCACAAGAAAAGATGAATGCTCTGTATGAAGCCCTATTTGGGGACATTGAGAAAGGGTTTGGAAAAGAAGCACCTTACAAGAAGAGCTACCTTGTTGCTGCTGTTGCCGAGGAAGAGGGTATGCCGTTGTTGCTGCTGCGGGCAATTGAGGAATTTTCTTGCAAGTCCACTTCTGCACTTAAGGAAGTTGCACTGGTTGTGAAGGCTCTTTACGATGTTGATGTGTTGGAGGAAGAGCACATAATGAAGTGGTATCAAGAAGGGCTGAAAGGAGACAGTAAGAACTCTCAGATTTGGAAGAATATGAAGCCTTTCATTGAGTGGCTCCAGAGTGCAGAATCAGAGTCTGAGGAAGAATAG 1308 0.4404 MALQNIGAGNSDDAFYRYKMPRMITKIEGRGNGIKTNIVNMVDIAKALARPAAYTTKYFGCELGAQSKFDEKTGTSHVNGAHDTPKLAGLLENFIKKYVQCYGCGNPETEILITRNQMIQLKCAACGFVSDVDMRDKLTTFIIKNPPETKKGSKDKKAMRRAEKERLKEGEAADEELKKLKKEIVKKKVAPKEGTAKSSSSRKKGNGSDEDHSSPTRSPTDEKDEAEDEDDVQWQTDTSLEAARQRIQEQLSAVTADMVMLSTNEAEEKAASKVSDKPNNGNSMNYKTLVAEIKADLKKGVKAKDLVAHWATLPVSPQEKMNALYEALFGDIEKGFGKEAPYKKSYLVAAVAEEEGMPLLLLRAIEEFSCKSTSALKEVALVVKALYDVDVLEEEHIMKWYQEGLKGDSKNSQIWKNMKPFIEWLQSAESESEEE 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03213 435 Gene3D - 3 104 - -
Vivi6g03213 435 SMART eIF2Bneu4 15 129 IPR002735 GO:0003743|GO:0006413
Vivi6g03213 435 Pfam eIF4-gamma/eIF5/eIF2-epsilon 361 435 IPR003307 GO:0005515
Vivi6g03213 435 FunFam Eukaryotic translation initiation factor 5 1 104 - -
Vivi6g03213 435 Pfam Domain found in IF2B/IF5 11 127 IPR002735 GO:0003743|GO:0006413
Vivi6g03213 435 SMART 542_3 345 431 IPR003307 GO:0005515
Vivi6g03213 435 Gene3D - 105 145 - -
Vivi6g03213 435 MobiDBLite consensus disorder prediction 187 222 - -
Vivi6g03213 435 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 434 IPR045196 GO:0003743|GO:0006413
Vivi6g03213 435 Gene3D - 276 435 - -
Vivi6g03213 435 FunFam Eukaryotic translation initiation factor 5 105 145 - -
Vivi6g03213 435 MobiDBLite consensus disorder prediction 145 172 - -
Vivi6g03213 435 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 98 133 IPR016190 GO:0003743|GO:0006413
Vivi6g03213 435 SUPERFAMILY ARM repeat 285 429 IPR016024 -
Vivi6g03213 435 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 10 101 IPR016189 GO:0003743|GO:0006413
Vivi6g03213 435 ProSiteProfiles W2 domain profile. 276 435 IPR003307 GO:0005515
Vivi6g03213 435 MobiDBLite consensus disorder prediction 187 233 - -
Vivi6g03213 435 MobiDBLite consensus disorder prediction 148 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03213 Vivi-Chr6 122212130 122215190 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03213 1 428 Eukaryotic Initiation Factors Gene Family AT1G36730 64.865 6.42e-178 502
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03213 K03262 - gmx:100778073 635.18