Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03209 ATGGCTTCCAAATCCCAAACCCTAGACTTAAACTCCACCCAGTTATTCACCACCGCTCTTCAATCCCTCAATCTCCCAAAACCCTCCCTCCCACTCCCTCCACTCCCATCACCATCATCATCTTCCTCCATTCCCCACTCCAAACTCATTCCCAACACCCGCTTCCTCATCGACGCATTCCGCCACTCCGGCGACTTCTCCGTCTCCTACTTCCTCTCTCACTTCCACTCCGACCACTACACCGGACTCACCTCCTCATGGTCCCGCGGTATCATCTTCTGTTCCGCCACCACCGCCACTCTCCTCATCCGCATCCTCAACATCCCTCCCTCTTTCATCTACCCTCTCCCCCTTCACCAACCTGTTCTAATCGACGGCTCTTCTATCACCCTCATCGACGCCAATCACTGTCCCGGTGCCGTCCAGTTCCTCTTCCATGTTCCATTGTCCGAACAACAACAATCCATGAGGTATGTTCATACTGGCGATTTTCGGTTTACTCCTGAAATGAAATTGGACCCTGCACTTGGTTCATTTATTGGCGCTGATGCTGTGTTTTTGGATACAACTTATTGTCATCCTAAGTTTGTTTTCCCTTCGCAAGACGAGTCTATTAATTATGTTGTTGATGCTGTAAACCAGTGTGATGGTGATGATGTGTTGATTCTTGTTGCCACTTATGTTATTGGGAAGGAGAAGATTTTGCTTGAGCTTGCTAGGAAGTTTAGGAAGAAGGTGCATGTGGATGCTAAGAAAATGGAGGTTTTGAGGGCTCTTGGGTATGGAGAGAGTGGGGAGTTTACTGAGGATGTTTTAGAGACTAATATTCATGTTGTTGGGTGGAATGTGTTGGGGGAGACTTGGCCTTATTTTAGGCCTAATTTTGTTAGGATGAAGGAGATTATGAATGAGAGAGGGTACTCTAAGGTTGTTGGTTTTGTGCCTACTGGATGGACTTATGAAGTGAAGCGCGATAAGTTTGCGGTTAGGTCCAAGGATTCTTGTCAGATTCATCTTGTGCCGTATAGTGAGCATTCGAACTATGATGAGCTCAGGGAATATGTGAGGTTTTTGAAACCAAAGAGGGTTGTTCCGACTGTGGGTTTAGATGTTGAGAAGAGTGATAGTAAACATGTTGACAAAATGAGGAAGTATTTTGCTGGTTTGGTTGATGAGACGGCCAATAAGCAAGAGTTTTTAAAGGGGTTTAAGCGGTGTGATTCTGGTGTAGTGGGTTTTGAGACTGGGAAGGATGTAACTGGTGATTTGGAACCAGGGTCGAGCATCGAGAAAGAGGTCAAGCCATCTGATGTGGGAGAGGATAGTAGTAATCCAAATGTTATTGTGAGTCTGCCATCTTGTATGGGAGAAACTTGCATAGAAGATCCTACATTGCTAAATGAAGAAGAAAAAGAGAAGGTCATTCAAGAACTGAGTAGTTGTTTGCCCACGTGGGTCACCAGAAGCCAGGTGTTAGATTTGATCAGCATCTTTGGGAGCAATGTCGTTGAAGCAGTTTCTAATTTCTTTGAACGTGAAACTGAATTTCATGAGCAAGTAAATTCTGGTCAAACTTCAGTTTCAACACCCAGGTGTTGCCCATCGAATGACTCCAGTCCTATTTCAAAATCAAACCTCAACAATACAAACAGCCCTTTAAAAAATTTGGACATTTTTCCAAGTCAAGACTCTAAATTGACCAACTCCAAATTGACTAAACTAAGGCACACACTACCAAGTCAGATTTCCCCTTCCAAAAGAAAGAGGAGTAGTGAAAGTAAGCCAAACAAGAAAGTCAAAGTCAAAGCAAAATCAGAATCAAGTGGTTCAAAGCAGGCAACGATAACAAAATTCTTCAGCAAAGCAATGCCTGAGATTCCTGGTGATACCCAATCTGATCAATGCGGAACGAATCTGGGGGAAAGCCCCGAAGTTGAAGAATTGTTACCGACTGCTGATGGAAACTTGTATAAGCATGAGATTGATCAGTTTATACAAATAATGAACGGGGACGAGTCATTAAAAAAGCAAGCAGCTACTATAATTGAAAAGGCAAAAGGAGATATCAATAAAGCATTGGATATATATTATTGTAGTTCTGGCAATCTTGGTGCAAGTGAAATATCAGTTCAAGGAGAGTGCAATATCAACAGACCTTTAGAGAAGAAGAATGTGTCGCAAGAATTGAGAGTTATATCTGATATTTCTATGCATAGAGTGTTAAAAGATAATGTAGATGCAACTCATGTATCTTTACCATCTGATAAATACAACCCCAAAGAACATGCGTGTTGGAGTGATGGACAGCCTGCACCATATTTACATCTTGCACGAACCTTCAGCTTGCTTGAGGATGAAAAAGGAAAGATAAAAGCTACTTCAATGCTATGCAACATGTTCAGAAGTTTGTTGGCCTTGTCTCCAGAAGATGTGCTTCCTGCTGTGTATCTATGTACAAACAAAATTGCTGCAGACCATGAAAACGTGGAACTAAATATTGGTGGAAGTTTAGTCACTACAGCACTCGAAGAGGCGTGCGGGACAAATCGATTGAAAATTAGGGAGATGTATAACAAACTTGGCGACCTGGGTGATGTTGCTCAAGAGTGTCGTCAAACACAGAGATTGCTCGCACCACCTACACCACTTCTGATTAAAGATATTTACTCTGCTCTACGAAAGATAAGTGTGCAAGCAGGTAATGGAAGCACATTACGAAAGAAAGGCATCATTGTTCATCTCATGCGTTCCTGCCGTGAAAAGGAGATGAAGTTTCTTGTCCGGACCTTGGTCAGGAACTTGAGGATTGGAGCAATGCTTAGAACTGTTTTGCCTGCATTGGCTCATGCTGTTGTTTTGAATTCTCGCCATACTGTGTGCCAAGAAGGAACGGCAGAAAATTTGAAAGCGGCGCTTCAGGTCCTTTCTGTGGCAGTTGTTGAAGCATATAACATACTGCCAAATTTGGATATCATAGTCCCATCTCTCATGAACAAAGGCATTGAGTTTTCAGTTTCAAGTTTATCAATGGTTCCAGGAATCCCAATTAAGCCTATGCTTGCAAAGATCACCAATGGCATTCCCCAAGCACTGAAGCTATTTCAAAATAAAGCCTTTACATGTGAATATAAGTATGATGGTCAGCGAGCTCAAATTCACAGATTAGTCGATGGATCAATTCATGTTTTTTCAAGAAATGGAGATGAATCAACTTCAAGATTCCCTGATCTGATTGACACGATAAGGGAATCTTGCAAGCCAGTTGCATCAACTTTCATAATCGATGCAGAGGTTGTTGGTATTGATAGAAAAAATGGATATAGAATTATGTCTTTCCAGGAGCTATCTTCACGCGAGAGAGGAGGCAAAGATACTTTAGTTACTAAAGAGAGCATAAAGGTGGGCATTTGCGTCTTTGTCTTCGATATCATGTTTGCAAATGGAGAACAGTTACTGGGTTTTCCACTCCGCCGAAGACGAAAGTATCTGAAGGATTTGTTCTATGATGAACGACCTGGGTATTTTGAATATGCAAAAGAAACAACTATCGAAGCAGATGATGCTTGCTTAACATGTGAAGCCACATTAACTAGAATAAATGCTTTCCTTGAAGATGCACTCCGCTCTTCATGTGAAGGAATTATGGTGAAAACATTGGATATTGATGCTGGGTATTCTCCATCGAAGCGATCTGACAAATGGTTAAAGGTCAAGCGAGATTATGTAGAAGGATTAAATGATACTCTTGATTTAGTACCAATTGGTGCTTGGCATGGAAATGGAAGGAAAGCTGGATGGTATAGTCCATTTCTCATGGCATGTTTCAATCCTGAAACTGAGGAGTATCAAAGTGTATGCCGAGTGATGTCTGGGTTCTCAGACTCTTTTTACATAGAGATGAAAGAAATCTTTTCTGGGGACAAAGTCTTGTCAAAAAAGCCACCATATTATCAAACAGGAGAGACACCAGACATGTGGTTTTGTCCGCAGCTTGTTTGGGAAATAAGAGGTGCAGACTTCACAGTATCCCCAGTTCATCATGCTGCTATTGGCTTAGTTCATCCATCTCGAGGCATCTCAATCAGATTTCCAAGATTTATTTGCAGCGTGTCAGACAGAAATCCAGAAGAATGTAGCACAGCTGCCGATATAGTTGAAATGTTTCATTCGCAGACTCGGAAGATGGATGTCACAACCGAAGGCTGA 4206 0.4215 MASKSQTLDLNSTQLFTTALQSLNLPKPSLPLPPLPSPSSSSSIPHSKLIPNTRFLIDAFRHSGDFSVSYFLSHFHSDHYTGLTSSWSRGIIFCSATTATLLIRILNIPPSFIYPLPLHQPVLIDGSSITLIDANHCPGAVQFLFHVPLSEQQQSMRYVHTGDFRFTPEMKLDPALGSFIGADAVFLDTTYCHPKFVFPSQDESINYVVDAVNQCDGDDVLILVATYVIGKEKILLELARKFRKKVHVDAKKMEVLRALGYGESGEFTEDVLETNIHVVGWNVLGETWPYFRPNFVRMKEIMNERGYSKVVGFVPTGWTYEVKRDKFAVRSKDSCQIHLVPYSEHSNYDELREYVRFLKPKRVVPTVGLDVEKSDSKHVDKMRKYFAGLVDETANKQEFLKGFKRCDSGVVGFETGKDVTGDLEPGSSIEKEVKPSDVGEDSSNPNVIVSLPSCMGETCIEDPTLLNEEEKEKVIQELSSCLPTWVTRSQVLDLISIFGSNVVEAVSNFFERETEFHEQVNSGQTSVSTPRCCPSNDSSPISKSNLNNTNSPLKNLDIFPSQDSKLTNSKLTKLRHTLPSQISPSKRKRSSESKPNKKVKVKAKSESSGSKQATITKFFSKAMPEIPGDTQSDQCGTNLGESPEVEELLPTADGNLYKHEIDQFIQIMNGDESLKKQAATIIEKAKGDINKALDIYYCSSGNLGASEISVQGECNINRPLEKKNVSQELRVISDISMHRVLKDNVDATHVSLPSDKYNPKEHACWSDGQPAPYLHLARTFSLLEDEKGKIKATSMLCNMFRSLLALSPEDVLPAVYLCTNKIAADHENVELNIGGSLVTTALEEACGTNRLKIREMYNKLGDLGDVAQECRQTQRLLAPPTPLLIKDIYSALRKISVQAGNGSTLRKKGIIVHLMRSCREKEMKFLVRTLVRNLRIGAMLRTVLPALAHAVVLNSRHTVCQEGTAENLKAALQVLSVAVVEAYNILPNLDIIVPSLMNKGIEFSVSSLSMVPGIPIKPMLAKITNGIPQALKLFQNKAFTCEYKYDGQRAQIHRLVDGSIHVFSRNGDESTSRFPDLIDTIRESCKPVASTFIIDAEVVGIDRKNGYRIMSFQELSSRERGGKDTLVTKESIKVGICVFVFDIMFANGEQLLGFPLRRRRKYLKDLFYDERPGYFEYAKETTIEADDACLTCEATLTRINAFLEDALRSSCEGIMVKTLDIDAGYSPSKRSDKWLKVKRDYVEGLNDTLDLVPIGAWHGNGRKAGWYSPFLMACFNPETEEYQSVCRVMSGFSDSFYIEMKEIFSGDKVLSKKPPYYQTGETPDMWFCPQLVWEIRGADFTVSPVHHAAIGLVHPSRGISIRFPRFICSVSDRNPEECSTAADIVEMFHSQTRKMDVTTEG 1401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03209 1401 Pfam DNA ligase N terminus 772 948 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Vivi6g03209 1401 MobiDBLite consensus disorder prediction 423 444 - -
Vivi6g03209 1401 Gene3D - 197 345 - -
Vivi6g03209 1401 CDD OBF_DNA_ligase_I 1247 1390 - -
Vivi6g03209 1401 MobiDBLite consensus disorder prediction 518 614 - -
Vivi6g03209 1401 Pfam DNA repair metallo-beta-lactamase 265 368 IPR011084 -
Vivi6g03209 1401 MobiDBLite consensus disorder prediction 424 438 - -
Vivi6g03209 1401 NCBIfam ATP-dependent DNA ligase 830 1388 IPR000977 GO:0003910|GO:0005524|GO:0071897
Vivi6g03209 1401 SUPERFAMILY Nucleic acid-binding proteins 1247 1391 IPR012340 -
Vivi6g03209 1401 CDD Adenylation_DNA_ligase_I_Euk 1009 1241 - -
Vivi6g03209 1401 Gene3D - 1243 1400 IPR012340 -
Vivi6g03209 1401 FunFam DNA ligase 1243 1400 - -
Vivi6g03209 1401 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 1042 1050 IPR016059 GO:0003909
Vivi6g03209 1401 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 974 1240 - -
Vivi6g03209 1401 MobiDBLite consensus disorder prediction 519 586 - -
Vivi6g03209 1401 ProSiteProfiles ATP-dependent DNA ligase family profile. 1129 1276 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Vivi6g03209 1401 Gene3D DNA ligase/mRNA capping enzyme 1047 1178 - -
Vivi6g03209 1401 Gene3D - 749 1020 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Vivi6g03209 1401 Gene3D - 50 367 IPR036866 -
Vivi6g03209 1401 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 278 1393 - -
Vivi6g03209 1401 Pfam ATP dependent DNA ligase C terminal region 1264 1368 IPR012309 GO:0003910|GO:0006281|GO:0006310
Vivi6g03209 1401 FunFam DNA ligase 197 345 - -
Vivi6g03209 1401 FunFam DNA ligase 1047 1178 - -
Vivi6g03209 1401 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 751 1001 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Vivi6g03209 1401 SUPERFAMILY Metallo-hydrolase/oxidoreductase 51 368 IPR036866 -
Vivi6g03209 1401 CDD SNM1A-1C-like_MBL-fold 48 194 - -
Vivi6g03209 1401 Gene3D - 1029 1242 - -
Vivi6g03209 1401 Pfam ATP dependent DNA ligase domain 1018 1238 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03209 Vivi-Chr6 121932620 121952816 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03209 753 1391 Core DNA Replication Machinery Family AT1G08130 39.782 4.38e-167 518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03209 - - gmx:100807673 2156.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g03209 6 121932620 121952816 Vivi6g03209 6 121932620 121952816 ECH