Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03185 ATGGAAGAAGAAGAAGATGAAACCTTATATATTGGTGATGAAATTTATGAGAATCATTCCAAGCGTGCTTTCGAGGGTGAAGAAGACGATGATTTTCCTTCCCGAACTGCTTCTCTTAACGCTGATGAACTCGACATCTCGAAACTTGATTTGCCTTCACAACTTGTTAGTTCGCTCCGTGAGAGGGGGATTACGCAACTTTTTCCTATTCAGAAAGCGGTGTTAGTGCCTGCACTTCAAGGTAGAGATATCATTGCTCGTGCAAAGACTGGAACGGGGAAGACACTGGCTTTTGGAATTCCTATTATCAATGGCCTCGATAATGGCGAGGATTCAGATAGTTACAGTAACAGAAATGTTAATGAAGTCATGTGTGCCTTCAATTTATGCATTTAA 396 0.4116 MEEEEDETLYIGDEIYENHSKRAFEGEEDDDFPSRTASLNADELDISKLDLPSQLVSSLRERGITQLFPIQKAVLVPALQGRDIIARAKTGTGKTLAFGIPIINGLDNGEDSDSYSNRNVNEVMCAFNLCI 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03185 131 Pfam DEAD/DEAH box helicase 68 106 IPR011545 GO:0003676|GO:0005524
Vivi6g03185 131 Gene3D - 2 126 IPR027417 -
Vivi6g03185 131 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 40 108 IPR027417 -
Vivi6g03185 131 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 36 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03185 Vivi-Chr6 121571949 121572814 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03185 55 108 Eukaryotic Initiation Factors Gene Family AT3G19760 35.185 6.11e-06 42.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03185 - - vvo:131614554 261.922