Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03161 ATGGCTTACTTGTTTAATATCCTTCCTCCTATCCATATTATTCAATTCATAGTCCTCTTGAAACTGATTCAGATACCTTTATATTTGAGCTCTGGTGAAGGTTGTGATAATCTGTTTACATGTGGAAATATAACACAAATTGGTTTTCCTTTCTGGGGAGAGGATCGACCAAAAGAGTGTGGCTACCCTTTGTTGCAACTCAGTTGCGTAAACAACATCAGTTACATAACAATCAATGATGTCAAGTATCGTGTTTTAGAAGCCAACTCTTTCGAACATACTTTGAGAATCACTAGAGAAGACTATTTGCAAGGATTATGCCCAGCAAAATATGTCAACACAACATTAGACACTAAGATCTTTGTTTATGGTTCTAAATACAATAATCTTACCTTCTTTTATGATTGTCCACTTTCAATTACTTTTCCATCTCCATTTGGACATTTTCCATGTTCTTCAAATGGTTTTGCTGCTAAATATGTTTATATTTGGTTTGGTCCAAATATTGGTCTCCAAGCTTCTTCATGCCAAGAAAGTATCAGTGTTCCAATTTCTAATTCATCGGTTGATGTTAGTGATTCAACTAAAATACAAAGCGCAGTCAGAGATGGATTTGTGGTGAAATGGATAGCAGGTACTGAAGATTGTGAGAAGTGTAAAAATTCAAGTGGATTTTGTGGTTATGATTGGATGTCAAAGCAAACAACCTGCTACTGCAGAGATCAATCTTGTTCTTCTCCGCCACAACAGTCTCAAGAATCTCCACATCCGGGTTCAAAACATAACAGGAGGCTTATTGTGATAGGTGCTGTAGGATTCGGAGTAACAATGTTCTTTATTATTGTTATTACGATTAGTTGTTTCCTTAAAAGAGGTACGGGTAGACAACAAAAGAGTATTTTCAGGAAAAGAAGAAAGCTTGTTGAGCACAATGTGGATGTTTTTATGCAAAATTATAATTTATCCATGCCAAGAAGATACAGTTATACAGAAATAAAAAGGATCACAAACTCATTTCGAGAGAAACTAGGCCAGGGAGGATATGGTGTTGTGTACAAAGCAAGTTTATTTGACAGTCGTTTAGTGGCCGTTAAAGTAATAAAAGAGTCAAAGGGGAGTGGAGAAGAATTCATAAATGAAGTTGCTAGCATTAGTAGAACATCACACATGAACATTGTGTCACTCTTTGGTTATTGTTATGAGGGAAACAAAAGAGCACTAATATATGAGTTCATGTCCAAAGGTTCATTGGATAAGTTCATCTATAAAAGTGAATTTCCTAATGCTATTTGTGATTTTGATTGGAACACTCTGTTCCAAATTGCAATAGGCATTGCTAGAGGACTAGAGTACTTACATCAAGGATGCAACTCAAGGATTTTGCATCTTGATATCAAACCCCAAAACATTCTTTTGGATGAAGACTTTTGTCCAAAAATATCTGACTTTGGTTTGGCTAAAATATGCCAAAAGAAGGATAGTATTGTGTCAATACTAGGGGCAAGAGGAACTATAGGATATATGGCACCCGAAATATTTAGTAGAGCATTTGGTGGAGTTTCTTACAAGTCTGATGTGTACAGTTATGGCATGTTGATTCTTGAAATGATAGGAGGAAGAAAGAACTATGACACTGGAGGGTCGAGTACTTCTGAAATGTATTTTCCTGATTGGATTTATAAAGATCTTGAGCAAGGTAATACTAGTAACACTCTTTTAAATAATTTGACAATCTCAGAGGAAGAAAATGATATGGTTAGAAAGATTACTTTGGTGAGTCTATGGTGCATTCAAACTAATCCATCCGATAGACCAGCGATGAATAAAGTAATAGAAATGCTACTTGGACCACTTTCATCAGTGTCATATCCTCCAAAGCCGGTCTTGTTTTCTCCTGAAAGGCCTGCACTACCGGTAGAATGTATATCCTCATCCGATTTCAATGAAACAAGTTCAATTACAGTATCGAAATAA 1974 0.3592 MAYLFNILPPIHIIQFIVLLKLIQIPLYLSSGEGCDNLFTCGNITQIGFPFWGEDRPKECGYPLLQLSCVNNISYITINDVKYRVLEANSFEHTLRITREDYLQGLCPAKYVNTTLDTKIFVYGSKYNNLTFFYDCPLSITFPSPFGHFPCSSNGFAAKYVYIWFGPNIGLQASSCQESISVPISNSSVDVSDSTKIQSAVRDGFVVKWIAGTEDCEKCKNSSGFCGYDWMSKQTTCYCRDQSCSSPPQQSQESPHPGSKHNRRLIVIGAVGFGVTMFFIIVITISCFLKRGTGRQQKSIFRKRRKLVEHNVDVFMQNYNLSMPRRYSYTEIKRITNSFREKLGQGGYGVVYKASLFDSRLVAVKVIKESKGSGEEFINEVASISRTSHMNIVSLFGYCYEGNKRALIYEFMSKGSLDKFIYKSEFPNAICDFDWNTLFQIAIGIARGLEYLHQGCNSRILHLDIKPQNILLDEDFCPKISDFGLAKICQKKDSIVSILGARGTIGYMAPEIFSRAFGGVSYKSDVYSYGMLILEMIGGRKNYDTGGSSTSEMYFPDWIYKDLEQGNTSNTLLNNLTISEEENDMVRKITLVSLWCIQTNPSDRPAMNKVIEMLLGPLSSVSYPPKPVLFSPERPALPVECISSSDFNETSSITVSK 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03161 657 Pfam Protein kinase domain 340 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g03161 657 PANTHER RUST RESISTANCE KINASE LR10-RELATED 309 634 IPR045874 GO:0004672
Vivi6g03161 657 Pfam Wall-associated receptor kinase C-terminal 172 242 IPR032872 -
Vivi6g03161 657 Gene3D Transferase(Phosphotransferase) domain 1 412 621 - -
Vivi6g03161 657 Gene3D Phosphorylase Kinase; domain 1 311 411 - -
Vivi6g03161 657 Pfam Wall-associated receptor kinase galacturonan-binding 35 98 IPR025287 GO:0030247
Vivi6g03161 657 SUPERFAMILY Protein kinase-like (PK-like) 313 614 IPR011009 -
Vivi6g03161 657 FunFam PR5-like receptor kinase 412 624 - -
Vivi6g03161 657 ProSiteProfiles Protein kinase domain profile. 337 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g03161 657 ProSitePatterns Protein kinases ATP-binding region signature. 343 365 IPR017441 GO:0005524
Vivi6g03161 657 SMART serkin_6 337 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g03161 657 ProSitePatterns Serine/Threonine protein kinases active-site signature. 460 472 IPR008271 GO:0004672|GO:0006468
Vivi6g03161 657 FunFam S-receptor-like serine/threonine-protein kinase 305 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03161 Vivi-Chr6 120898651 120902102 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03161 16 629 Receptor kinase-like Gene Family AT1G66910 41.498 1.53e-163 483
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vivi6g03161 Pkinase 1.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03161 - - psat:127126843 762.681