Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03160 ATGAAACCTCTGCTTCATCATCCATCTTCTTTTTCCATTACTTTCTTTTTCTCCTTGGCACTTTTGATGATCTCAATCATCAATATTCCAAAGTGTAAGTGCGACGATGACAACCAATATTATAAGAGCTGCAACAACAGTTTTAGCTGCGGAAACAGCGTCACAAACCTCAAGTATCCATTCTGGGGAGGAAGCAGAGCAGGGTATTGTGGTAATTCTTCTGATCCTAATTTGATGCTCATGTGCGAAAGCGGTGTCCCAAAGATAACAATCAATTCCGTCAAATACCGTATTTATAAATGGGAAGATACAATACAGAGACTAACAGTTGCCAGAGACGATTACTGGAGTGGTATTTGTGCTGTGACTGTGAGTAATAATTCTAAGAACAGCACATTCAATAACACTCCGTTTCAACGTGATGATGGTGTTTCTTCTACTTTAAATGTGTTATACAATTGCAATACAAATGGAGATAGCAATTTTAGTATTACATGCGGTAGTAATATGAAAGTTGCGTACACCCTGGATCTTGGTTCGATCAAATGCACTCCAACTGTTATCATTAAGATTCCAATTTCGGTAACCCAAGCTTCACAAATTGGAACTCTTAATGCTTTAATAGCAGCATTAAAAGACGGTTTTGCTTTGAAATGGAGAGGAGACTATGAAGGGTGGCTGAGTTGCGTTGGTTCTGGTGGTGTGTGTGGCAGCAATGAAGGAACTGAATTCAAATGTTTCTGCAAAGATGGAGCTCATACAACTACATGCTTTTCACAAAAGGCCCCAGCCCCAACCCCAACCACAAGTTCAAAACTTAACTGGTGGCCTATTGTGATAGGTGCTGCAGGATTTGGAGTATTGTTCTTAATAATTATTATGATTAGATGTCACCTTAAAAGGGGTACAGGTAGACAACAAAAGAGTATTTTCAGGAGAAGAAGAAAGCTTGTTGAGCACAATGTGAACGCTTTTATGCAAAATTATAATTTATCTATGCCAAGAAGATATAGGTATACAGAAGTAAAAAGGATCACAAACTCATTTCGAGAGAAATTAGGCCAAGGAGGATATGGTGTTGTATACAAAGCAAGTTTAAACGATGGTCGTCAAGTGGCAGTGAAAGTAATAAATGAATCAAAGGGAAATGGAGAAGAATTCATAAACGAAGTTGCTAGCATTAGTAGAACATCACACATGAACATTGTGTCACTTTTAGGTTATTGTTATGAGGGGAACAAAAGAGCACTAATATATGAGTTCATGCCCAAAGGTTCATTGGATGGGTTCATCTATAAAAGTGAATTTCCTAATGCTATTTGTGATTTTGATTGGAACACTCTGTTCCAAATTGCAATAGGCATTGCTAGAGGACTAGAGTACTTGCATCAAGGATGCAACTCAAGGATTTTGCATCTTGATATCAAACCCCAAAACATTCTTTTGGATGAAGATTTTTGTCCAAAAATATCTGACTTTGGTTTGGCTAAAATATGCCAAAAGAAGGATAGTATTGTGTCAATACTAGGGACAAGAGGAACTATAGGATATATGGCACCTGAAATATTTAGTAGAGCATTTGGTGGAGTCTCTTACAAGTCTGATGTGTACAGTTATGGCATGTTGATTCTTGAGATGATAGGAGGAAGAAAGAACTATGACACCGGAGGGTCGTGTACTTCTGAAATGTATTTTCCTGACTGGATTTATAAAGATCTTGAGCAAAGTAATAGTAGTACTCTTTTAAATAGTTTGACAATCTCAGAGGAAGAAAATGATATGGTTAGAAAGATTACTTTGGTGAGTCTATGGTGCATTCAAACAAATCCATCAGACAGACCACCAATGAATAAGGTAATAGAAATGCTACAGGGGCCACTTTTATCAGTGTCATATCCTCCAAAGCCGATCTTGTTTTCTCCAGAAAGGCCAGCACTACCGGTAGAATGTATATCCTCATCCGATTTCAATGAAACAAGTTCAATTACAGTATCGAAATAA 2001 0.3763 MKPLLHHPSSFSITFFFSLALLMISIINIPKCKCDDDNQYYKSCNNSFSCGNSVTNLKYPFWGGSRAGYCGNSSDPNLMLMCESGVPKITINSVKYRIYKWEDTIQRLTVARDDYWSGICAVTVSNNSKNSTFNNTPFQRDDGVSSTLNVLYNCNTNGDSNFSITCGSNMKVAYTLDLGSIKCTPTVIIKIPISVTQASQIGTLNALIAALKDGFALKWRGDYEGWLSCVGSGGVCGSNEGTEFKCFCKDGAHTTTCFSQKAPAPTPTTSSKLNWWPIVIGAAGFGVLFLIIIMIRCHLKRGTGRQQKSIFRRRRKLVEHNVNAFMQNYNLSMPRRYRYTEVKRITNSFREKLGQGGYGVVYKASLNDGRQVAVKVINESKGNGEEFINEVASISRTSHMNIVSLLGYCYEGNKRALIYEFMPKGSLDGFIYKSEFPNAICDFDWNTLFQIAIGIARGLEYLHQGCNSRILHLDIKPQNILLDEDFCPKISDFGLAKICQKKDSIVSILGTRGTIGYMAPEIFSRAFGGVSYKSDVYSYGMLILEMIGGRKNYDTGGSCTSEMYFPDWIYKDLEQSNSSTLLNSLTISEEENDMVRKITLVSLWCIQTNPSDRPPMNKVIEMLQGPLLSVSYPPKPILFSPERPALPVECISSSDFNETSSITVSK 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03160 666 ProSiteProfiles Protein kinase domain profile. 347 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g03160 666 SMART serkin_6 347 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g03160 666 PANTHER RUST RESISTANCE KINASE LR10-RELATED 319 643 IPR045874 GO:0004672
Vivi6g03160 666 Pfam Protein tyrosine and serine/threonine kinase 349 623 IPR001245 GO:0004672|GO:0006468
Vivi6g03160 666 SUPERFAMILY Protein kinase-like (PK-like) 324 623 IPR011009 -
Vivi6g03160 666 FunFam PR5-like receptor kinase 422 633 - -
Vivi6g03160 666 Gene3D Transferase(Phosphotransferase) domain 1 422 629 - -
Vivi6g03160 666 Pfam Wall-associated receptor kinase C-terminal 160 251 IPR032872 -
Vivi6g03160 666 ProSitePatterns Serine/Threonine protein kinases active-site signature. 470 482 IPR008271 GO:0004672|GO:0006468
Vivi6g03160 666 Gene3D Phosphorylase Kinase; domain 1 320 421 - -
Vivi6g03160 666 FunFam Suppressor of npr1-1 constitutive 4 319 421 - -
Vivi6g03160 666 ProSitePatterns Protein kinases ATP-binding region signature. 353 375 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03160 Vivi-Chr6 120883073 120893564 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03160 10 665 Receptor kinase-like Gene Family AT1G66910 39.943 2.23e-148 444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vivi6g03160 PK_Tyr_Ser-Thr 1.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03160 - - mtr:11438961 958.747