LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi6g03150	ATGAAGATATTACTAAACCATCAAACTGTTTTCTTATCCATCCTCCTGTTCATTATTTCAATTGCTATTACTAATGCAGAATACCAAGAGGCAGATTACATGTCCGATCTTTTAAAATCACTCGCTCCAACTCCTTCTACCTGGTCAAATACGACTCACTACTGCAAATGGAAAGGCATCTTTTGCGAATCCAATCGAGTTGTGTCCATTAACCTTCCATCAAGCTCACTCTCCGGAACGCTCCCTCCCCATCTCTACGCTCTCACTAATCTCACTCACATCGATCTCCACAACAATTCACTCACCGGTCCTTTGGCTAACTTTTCTGGTCTAGGCGCCCTCGAAGCCATATATCTCGGCCACAATAACTTCGACACAATCCCAAACGGTTGCTTTCAAGCAATTCCGTCTCTTAAAATACTTAACCTTAGCAATAACTTGAATCTACAACAATGGACTTTTGGAGGTGAAAAGGATTGGCTTAAATATGTTTGGATAGCAGGAGCATCAGTTGGATTTATAATATTTACTGGATTGATTATTTATTATCGTAAGGAGTGTCTTATTTTAGTACAAAGATGGATATTTAGGGGAACAACAAAATCTAGTGATCATATTGTGGAGAATTTTATGGAAAGTTATAAATTGTCAGTGCCGATAAAACAATATAAATATGCAGAAGTGAAAAGAATGACAAACTCATTCCGAGATAAATTAGGTCAAGGAGGATATGGTACTGTGTACAAAGCAAGCTTACCTGATGGTCGTCAAGTGGCTGTGAAAGTAATAAAAGAGTCCAAGGGAAATGGAGAAGAATTCATAAATGAAGTTGTCAGCATTAGTAGAACATCACACGTCAATATTGTCTCGCTTTTGGGTTTTTGTTATGGAAACAAAAGAGCGCTGATATATGAATTCATGTCCAAAGGGTCATTGGATAATTTCATCCTTAAAAGTGGGTCTTCTGATTCTATTTGTAGTTTGGATTGGAACACATTGTCCAAAATTGCAATGGGCATTGCTCGTGGATTAGAATATTTGCATCAAGGATGTATTTCAAGGATATTACATCTTGATATCAAACCTCAAAATATTCTTTTGGATGAAGATTTTTGCCCAAAAATATCTGATTTTGGACTAGCTAAAATATGTCAAAGAGATGATAGTGTTGTGTCTATACTTGGTGCACGAGGAACTATAGGATATATAGCACCAGAAGTATTTAGTCGTACAAATGGCGGAGTTTCTCACAAATCAGATGTATACAGTTATGGTATGTTAATTTTAGATATGATTGGAAGAAGAAAGAATTCAGGTGCTAGAGATTCATGTACTTCTGAATATTTTCCGGATTGGATTTATAAAGATCTTGAGCAAGATAATAACTCTGTGAATTGTATAGCAAATACGGAGGAGGAGAATGATATGGTGAGAAAAATTACTATGGTAAGTCTATGGTGCATTCAAACAAAACCATCCGATAGACCTTCAATTAGTAAAGTAATAGAAATGCTTCAAGCACCACTTCAGTCGGTTCCATATCCTCCCAAACCTTTTTTATATTCTCCTGAAATTCCAATATTGCAAACTTCATGCGTGCCTTCAAGCAGTTTGTCAGAGACAAAGTCATCAACCTTATCGGGGAATGGTTCCATAAAAACAAATAAGTTCAGCAAAGACAACAATGAAGATGTGATTGTAGTGTAA	1707	0.3656	MKILLNHQTVFLSILLFIISIAITNAEYQEADYMSDLLKSLAPTPSTWSNTTHYCKWKGIFCESNRVVSINLPSSSLSGTLPPHLYALTNLTHIDLHNNSLTGPLANFSGLGALEAIYLGHNNFDTIPNGCFQAIPSLKILNLSNNLNLQQWTFGGEKDWLKYVWIAGASVGFIIFTGLIIYYRKECLILVQRWIFRGTTKSSDHIVENFMESYKLSVPIKQYKYAEVKRMTNSFRDKLGQGGYGTVYKASLPDGRQVAVKVIKESKGNGEEFINEVVSISRTSHVNIVSLLGFCYGNKRALIYEFMSKGSLDNFILKSGSSDSICSLDWNTLSKIAMGIARGLEYLHQGCISRILHLDIKPQNILLDEDFCPKISDFGLAKICQRDDSVVSILGARGTIGYIAPEVFSRTNGGVSHKSDVYSYGMLILDMIGRRKNSGARDSCTSEYFPDWIYKDLEQDNNSVNCIANTEEENDMVRKITMVSLWCIQTKPSDRPSISKVIEMLQAPLQSVPYPPKPFLYSPEIPILQTSCVPSSSLSETKSSTLSGNGSIKTNKFSKDNNEDVIVV	568

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi6g03150	568	ProSitePatterns	Protein kinases ATP-binding region signature.	239	261	IPR017441	GO:0005524
	Vivi6g03150	568	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	355	367	IPR008271	GO:0004672\|GO:0006468
	Vivi6g03150	568	SMART	serkin_6	233	509	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi6g03150	568	ProSiteProfiles	Protein kinase domain profile.	233	520	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi6g03150	568	SUPERFAMILY	L domain-like	42	151	-	-
	Vivi6g03150	568	Gene3D	Transferase(Phosphotransferase) domain 1	307	512	-	-
	Vivi6g03150	568	Gene3D	Ribonuclease Inhibitor	30	162	IPR032675	-
	Vivi6g03150	568	Coils	Coil	454	474	-	-
	Vivi6g03150	568	Pfam	Leucine rich repeat N-terminal domain	33	62	IPR013210	-
	Vivi6g03150	568	Pfam	Protein kinase domain	237	503	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi6g03150	568	Gene3D	Phosphorylase Kinase; domain 1	197	306	-	-
	Vivi6g03150	568	SUPERFAMILY	Protein kinase-like (PK-like)	213	505	IPR011009	-
	Vivi6g03150	568	SMART	LRR_typ_2	111	134	IPR003591	-
	Vivi6g03150	568	SMART	LRR_typ_2	135	156	IPR003591	-
	Vivi6g03150	568	SMART	LRR_typ_2	88	110	IPR003591	-
	Vivi6g03150	568	PANTHER	RUST RESISTANCE KINASE LR10-RELATED	206	531	IPR045874	GO:0004672
	Vivi6g03150	568	FunFam	PR5-like receptor kinase	307	515	-	-
	Vivi6g03150	568	Pfam	Leucine rich repeat	107	146	IPR001611	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi6g03150	Vivi-Chr6	120750961	120755721	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi6g03150	166	520	Receptor kinase-like Gene Family	AT4G18250	53.699	1.60e-124	380

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRK10L-2	Vivi6g03150		Pkinase	4.3e-45	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi6g03150	-		-	vvo:131612225	1107.05