Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03146 ATGGCTCGTCCGGTGGAAAAAATTGTTGACATCAACGACACCAAGGAGTTGTGGAAAGTGGCGGTGAGAGTTGCCCATAAGTGGAAGGTAGTATCCAACAACAAGGAGCACTTTGAGATGATCTTCCAAGACAGAGAGGGCTGTGATATACACGTTGTTGTTCCAACTGCATGCATGGCTGCTTACAATGAGAAGTTTGAGGTGGACCGCACCTATACTGTCTCAAATTTTGCGGTTCAGTCTAATAACTTAGTTTTCAAACCAAGCTCCCACAAGTTCTTGGTGAAATTAACTGGAGGAACTGCAGTGGGTGATGTTGACAAACATGACATACCCCTCAAACCACGCCCCTTCACCAGTTTCCCTGACATCATTAACGGAAACTTTCAGAAGAATGTACTCATTGATGTTATTGGTATGCTCGAGAGTGTTGGGTATCAACAGACGCAAAGTGGCGGAAAAAAATGTCAGGCTAATTTTCTACTGAGGGATGCAAGCAACAACACCATTAATTGCACCCTCTGGGAGGACTATGCCAAACAGTTTTTTAAGTTTACCGAGGACAAATCTGCTACAAGTGGGCCTATTATTGTTTTGATTCAGTTTGCAAAAGTTAAAGAAGCTGGCCAGTACCCTCTCTCCGTTACCAACACATTCCATGTTACCAAGCTCCTTATCAATTCAGATCTCCCTGTTGTCAAGGACTTCCTTAACAGTTTCCCAAAGGAATCGTTACGTGTTGTTTCCACGCAGCTAACCTCTCAGTCTCAACAATACTCCCGCACATCGACAAATGATAACGATGGACAATGTCATTTGCAGAAGTTGCTGAAAGGTGCTATTTCAGTTCCACTTAGTGAGATGAAGAAAATCCGCGAGAATACTTTCTGTGCTACTGTTGCGAAAACAAGAAAACTCATTGCGTCTTCCCACGGATGGTACTATCAGTGCTGCCATGAATGCACTAAATCAGTTCGCGGTGACAAACCTCCGTACAAGTGTGATAATGGACATTCTACTGAGGCGGAGATCTATAAGTATAAGATTGAAGTCGAAGGTTTCCATTTGCAAACTTCTTGCAAATTCATTTTCTGGGATAGAGAATGTACCGAAATATTACACGTCTCTGCTGCTCATATGCGGGATACGATGATAAAGGCTGGTATCACAGATCCATTAGAATTTCCATTAGATCTTGATGCTATGTTGAAGTTGGAACTTGCATTGAGGGTTAAATGGCAGCCCAGCTGGGACAGCGCCTCGGTTATAATGTTCATTAAGGATGATGAGTTTGTAAAACAATTGAAGGCTCCTTGGGCGGAATCTCAGGCCGTGAATTCTGGACCATCTGTAACACCACTACCACTGCAGATTAAAGAGAGTGTCGATGAAGCCAAAACTGATCCTGCAGATGATTGTGACGTTCCAACGGACTTGGAGATAACATCGAAACACAACCCGGACCCTCTTACTCCCACAACAAAAAGGCAGAGTCATGGTGGTTCCAGCGAGTCGACGTCTCTATGTGACGGTGAACTATCTTCGACCAAATTGAAGAAGATCATTAAGTTGGAGAACAACAAGTAG 1587 0.436 MARPVEKIVDINDTKELWKVAVRVAHKWKVVSNNKEHFEMIFQDREGCDIHVVVPTACMAAYNEKFEVDRTYTVSNFAVQSNNLVFKPSSHKFLVKLTGGTAVGDVDKHDIPLKPRPFTSFPDIINGNFQKNVLIDVIGMLESVGYQQTQSGGKKCQANFLLRDASNNTINCTLWEDYAKQFFKFTEDKSATSGPIIVLIQFAKVKEAGQYPLSVTNTFHVTKLLINSDLPVVKDFLNSFPKESLRVVSTQLTSQSQQYSRTSTNDNDGQCHLQKLLKGAISVPLSEMKKIRENTFCATVAKTRKLIASSHGWYYQCCHECTKSVRGDKPPYKCDNGHSTEAEIYKYKIEVEGFHLQTSCKFIFWDRECTEILHVSAAHMRDTMIKAGITDPLEFPLDLDAMLKLELALRVKWQPSWDSASVIMFIKDDEFVKQLKAPWAESQAVNSGPSVTPLPLQIKESVDEAKTDPADDCDVPTDLEITSKHNPDPLTPTTKRQSHGGSSESTSLCDGELSSTKLKKIIKLENNK 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03146 528 MobiDBLite consensus disorder prediction 463 511 - -
Vivi6g03146 528 Gene3D - 109 248 IPR012340 -
Vivi6g03146 528 MobiDBLite consensus disorder prediction 484 511 - -
Vivi6g03146 528 SUPERFAMILY Nucleic acid-binding proteins 117 243 IPR012340 -
Vivi6g03146 528 MobiDBLite consensus disorder prediction 463 481 - -
Vivi6g03146 528 PANTHER OS03G0429900 PROTEIN 10 415 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vivi6g03146 528 CDD RPA1_DBD_B_like 136 241 - -
Vivi6g03146 528 Gene3D - 2 104 IPR012340 -
Vivi6g03146 528 Gene3D - 266 428 IPR012340 -
Vivi6g03146 528 CDD RPA1_DBD_A_like 19 103 - -
Vivi6g03146 528 Pfam Replication protein A OB domain 128 218 IPR031657 -
Vivi6g03146 528 SUPERFAMILY Nucleic acid-binding proteins 295 384 IPR012340 -
Vivi6g03146 528 SUPERFAMILY Nucleic acid-binding proteins 5 103 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03146 Vivi-Chr6 120655969 120658846 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03146 1 325 Core DNA Replication Machinery Family AT5G08020 22.874 7.77e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03146 - - vvo:131605367 710.294