Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03143 ATGGCCTATGCTGATTGCCATGAAAGCTCCTCCCCTACCTCTATCAATACCGTAAAACTTTTTGGTATCAACATTCAAGAAGAAGCTTGTTTGAATCAATCTCCATCATCACTCTCACAATCACGATCAGATCTATCTGAGTCTTTGAATGGGAAAAAGCTATACGAGTGTCAATATTGTTGTAGAGAATTTGCGAATTCGCAAGCTTTAGGAGGACACCAGAACGCGCATAAGAAAGAAAGACAGCTTCTGAAGCGTGCTCAAATGAAAGCTGCTCGTAGTTTTGTGCCTTCACATTACCATAACACATTTATGTTTCCTCCACCGCAGCAATATCATTACATACCGGCTCAGGCTCCTTCATCGTCGTGGCTATATACCATGCAAGAAGCAAGTTCAGGAGATCGTAGCTATCAGCATCCGGCGAGAGTTGGTGGATTCAATAGAGGCAGCGATTGTAGTGAAGGATTTGGTTTAAATTTGCATCTTGGTTTATAA 498 0.4197 MAYADCHESSSPTSINTVKLFGINIQEEACLNQSPSSLSQSRSDLSESLNGKKLYECQYCCREFANSQALGGHQNAHKKERQLLKRAQMKAARSFVPSHYHNTFMFPPPQQYHYIPAQAPSSSWLYTMQEASSGDRSYQHPARVGGFNRGSDCSEGFGLNLHLGL 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03143 165 SUPERFAMILY beta-beta-alpha zinc fingers 51 82 IPR036236 -
Vivi6g03143 165 ProSitePatterns Zinc finger C2H2 type domain signature. 57 77 IPR013087 -
Vivi6g03143 165 ProSiteProfiles Zinc finger C2H2 type domain profile. 55 82 IPR013087 -
Vivi6g03143 165 PANTHER ZINC FINGER PROTEIN 5 10 141 IPR044299 GO:0010090
Vivi6g03143 165 Gene3D Classic Zinc Finger 36 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03143 Vivi-Chr6 120633311 120633952 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03143 13 100 C2H2 Transcription Factor Family AT1G67030 57.955 1.08e-25 95.5