Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03129 ATGGCATCTCCTGGTGTTGAAATTGCGTCTTCTTCGCCGTTTGGTTGTGTTTTGAGAGATCGTAATCACCGCGATGGATATAGAGAGAGTAGCAAAGTTAAGGCTACGCAAGGTGCTTTTCAAAGAAACATTAAGAACTTTGTTATGGATCATCTCAACACGTGCATTTCCATGTCTTCTGATTCTCAGACAACAAATGAAAACAACAATGAGGGTCAGATTAATAGTAACAAGAACAATGATGATGGTTCTTGTTGGGTTTCGAAACCTGGTAACAATCTTGCGAAGATTCGTTTGACAAGAAACAGTCCTAATGATATCATCAACAATAAAGAAGAATCGAGCTTGGCTTCGTTGATTAGCCCGAGGCATTCGCGGCTTCTTGATCGATGGGCAGCGAAGCAAGCTCGCGAGATGGTGTCGACGTTGGAGAATGAAGCTGAATTGTTGTCCATTGACAACACCAATGAGGAAATGCCTCTAAGGACAACTAGTTCTACTACCTCTGACGAATGCTCTTCGGAGATATCGAACCTTGGCGCGTCTTCGCTTGTTCAGATATGGGAAAAAAGGCTTAACCAACCGAGTGGTTCCAAATCCAATACTCCAATGGAGAAAACTAGTCCAAATGGTGGTACAAGTGCGACTTGCAACAATGAGAGTGTATTTGTTGGGGTGGAACAACGAGGGTCGGAAATTGGAGAGTGTCTTGAAGGACAGTTATCAGGGAACGAAGAATCGTTTTCTTCGTTCCCTGATTGGGAGTCTGATAAAACAGGTGAACAAAGTAGGTGGTGTTCGTCAGGTGAACAAAGTAGGTGGTGTTCGTCAGAGAGTGATAGAGTCAGTGTTGCTGATATCATAAAGAAACTCACTGCTACGAGCCAAACTCCAAGTTCATCTATATATTTCGACGCTGACAACGACAATGAAGGGTGTGGTGGTAATAGCAGCGTGGCATGTTCTCCTTGTAAGGAGTTTGCACCAGAACTTTCGGAACAAAGAGCTTTTCCTCAGGTGACTTGTTCGCCAAGAATTAGAGGGCGTCGAGCCTTCAATGATTTGTTTATGCAGTTGGAGAAAGATCGACATGGAGAGCTAAAGAACCTGGCCGAACGTGGAACGGTATCCAAGTTCACACAAAGAGGTCGCATTCAGGCATTACTACGACTTAAATCAACTTCGTCTGAAGTAAGCAAACAAGTACAATCACAGGGATCTGCAATTATGCAACTAAGGGAAAAATTTGTTAATGGTGTGGAACAAAGAAGTACAGTCCAGGCAGAAGTAGCGAACATACGAAAACCTTGCAAGGAGATAGTAGACAACATCGCACAACTAGAAAACTCTTCCACCACTGATCAACTCAGCAAAGATGCAAGCAACGAGATTGCTCATGGAACTACGAGTCACGCCATGGAATCGATACACAAGTCGGTGTCTCTTACTAGAGAAGAAGATCAGCCAAGTTCAAATATCAAATCTCAAGAAACATGTTTTGAGCCTCAACATGATTATGCAAAGGAAACTTATGAGGCAGCTACGTCGGTGACTGATTCAAATGTTAATGAGAAAGAGGAAGAGGAAATTAGCCAGCAATATTATGAAACCGGTTATGATTGTGCAGAAGAAGAGGAGGGAAGTAACCAGAACTATGCTGAAAGCAATTGTGAAGAGAACTATGATGGAAGTAGTTATGACTGGTTCAGCGAAATTTCTCGGCCGAGAAGCTATTGGGAAGAGCGAAGGCAAGCTTGGTATAAAGAGATGCAAGAAACTGGTTCTCCAAATGACGATATACAAGTGCTTCTTCAAAGAAGGACAGTATCGAATTTCCTTTCGAGTGACTTCCGAGAAAAAATGGATAGATTGATGCAATCTCATAAGGGAACACAAACACATTTAGTCGCTAGTCAAGACGATGAGATAGACAACGAAGCGTTGATGGCGTTTTTCAAAGAACACCTGCAACCTGAAAGAACTCCTCGAGAGAATGAAATAGAGAAAACGGAAGACGAAGAAGAGGAAACAGTAAACGAGGAAGATGAAGAAGAAGAAGAGGAAGAGAAGCAAGATGAGAAAGAGCATGAAGAGGAGCAAGGAGGGGAGAGCTTGGTAAGTGATTCGTATCATGAAGTCGGAGACTACTCAAATCAATCCTCAGCATGGAGTTTTAGAGACAATGAAGCCGGTGATGATTTCGATAGAGTTGCGTCTACATCTTCACAACAACCTGATCAATCTCCGCCTTTCTATCATGACAATACTCGGCGAAACTCCCCGCCAATCAATCATCATTCAATTGAAATGGAAATCATATACGATATGAGAGGACACATGGAGCAACTTTATCAAGAAATGTCTGAACTAAGGAAATCAATAAAGAGTTGCATGGATATGCAGATGCAGATGCAATCACAGGAAAAGAAATCACATAACAAAGCTGGTAAAAAAGGAAACTGCTGCATTTGCAATGAGGTGAAAGCTGACTCAGTTTTTTACAGGTGTGGACACATGTGTGCATGTTTGAAGTGTGCCAATGAGCTACAATGGAAGAATGGAAAATGTCCAATATGTCGGGCTAATATAGACGATGTTGTTCGAGTGCAGGTTGATGTTTAG 2622 0.423 MASPGVEIASSSPFGCVLRDRNHRDGYRESSKVKATQGAFQRNIKNFVMDHLNTCISMSSDSQTTNENNNEGQINSNKNNDDGSCWVSKPGNNLAKIRLTRNSPNDIINNKEESSLASLISPRHSRLLDRWAAKQAREMVSTLENEAELLSIDNTNEEMPLRTTSSTTSDECSSEISNLGASSLVQIWEKRLNQPSGSKSNTPMEKTSPNGGTSATCNNESVFVGVEQRGSEIGECLEGQLSGNEESFSSFPDWESDKTGEQSRWCSSGEQSRWCSSESDRVSVADIIKKLTATSQTPSSSIYFDADNDNEGCGGNSSVACSPCKEFAPELSEQRAFPQVTCSPRIRGRRAFNDLFMQLEKDRHGELKNLAERGTVSKFTQRGRIQALLRLKSTSSEVSKQVQSQGSAIMQLREKFVNGVEQRSTVQAEVANIRKPCKEIVDNIAQLENSSTTDQLSKDASNEIAHGTTSHAMESIHKSVSLTREEDQPSSNIKSQETCFEPQHDYAKETYEAATSVTDSNVNEKEEEEISQQYYETGYDCAEEEEGSNQNYAESNCEENYDGSSYDWFSEISRPRSYWEERRQAWYKEMQETGSPNDDIQVLLQRRTVSNFLSSDFREKMDRLMQSHKGTQTHLVASQDDEIDNEALMAFFKEHLQPERTPRENEIEKTEDEEEETVNEEDEEEEEEEKQDEKEHEEEQGGESLVSDSYHEVGDYSNQSSAWSFRDNEAGDDFDRVASTSSQQPDQSPPFYHDNTRRNSPPINHHSIEMEIIYDMRGHMEQLYQEMSELRKSIKSCMDMQMQMQSQEKKSHNKAGKKGNCCICNEVKADSVFYRCGHMCACLKCANELQWKNGKCPICRANIDDVVRVQVDV 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03129 873 PANTHER BNAC05G24000D PROTEIN 1 872 - -
Vivi6g03129 873 Coils Coil 133 153 - -
Vivi6g03129 873 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 796 871 IPR013083 -
Vivi6g03129 873 CDD mRING-HC-C3HC5_NEU1 818 863 - -
Vivi6g03129 873 MobiDBLite consensus disorder prediction 654 709 - -
Vivi6g03129 873 Pfam Zinc finger, C3HC4 type (RING finger) 818 866 - -
Vivi6g03129 873 MobiDBLite consensus disorder prediction 732 764 - -
Vivi6g03129 873 Coils Coil 780 800 - -
Vivi6g03129 873 MobiDBLite consensus disorder prediction 59 85 - -
Vivi6g03129 873 Coils Coil 664 700 - -
Vivi6g03129 873 SUPERFAMILY RING/U-box 820 866 - -
Vivi6g03129 873 MobiDBLite consensus disorder prediction 735 763 - -
Vivi6g03129 873 MobiDBLite consensus disorder prediction 193 218 - -
Vivi6g03129 873 MobiDBLite consensus disorder prediction 242 265 - -
Vivi6g03129 873 MobiDBLite consensus disorder prediction 668 694 - -
Vivi6g03129 873 ProSiteProfiles Zinc finger RING-type profile. 821 860 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03129 Vivi-Chr6 120368497 120372519 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03129 813 872 C3H Transcription Factor Family AT3G06140 33.333 1.32e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03129 - - mtr:25488200 1118.99