Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03128 ATGGCAACAACAATGAAAACATTACCAACACTTTCACTTCTCTTGTGTTTCTTCTCTTTTGTTCTATTAGTCCTTTGTAGTGAAGATGAAATAATCACTAAAAATGTGCTTTTGGAGGTTAAGTCTTCTTTTGTGAATGACCCTGAAAATGTTTTAGAAAATTGGTCGGAGGATAACACTGATTATTGTACTTGGAGAGGTGTTTCATGTGACTCGTTGCATGTTGTGGTTGGACTCAACCTGTCTGACTCGAAACTCACTGGGTCAATTTCATCTTCACTCAGTCTTTTACAAAACCTACTCCACCTTGATCTTTCAACTAATCATCTTGTGGGTCCCATTCCACCTTCTCTCTCAAATCTCACTAAATTAGAATCTTTGCTTCTTTATTCAAACCAACTCACTGGTCAAATTCCAATCGAGTTGGGTTCGTTAGTGAGTCTCCAAGTTTTGCGAATCGGTGACAATGGACTCACTGGCGAGATTCCATCTTCGTTGGGTAATCTTGTTAACCTTGTTGCCCTTGGTTTGGCTTCATGCAAACTCACCGGTTTGATTCCGTATCAACTCGGTCGACTCACTGAGTTACAAAATTTGATCTTGCAAGACAACGAGTTGACAGGTCCGATTCCGTCCGAGTTAGGAAACTGTTCGAGCCTCGTCCGCTTTACTGCTTCTGACAACAAACTCAACGGCACAATCCCGAGTCAACTGGGTCAGCTCAGGAGCCTCCAGATTCTCAACCTTGCAAACAACACATTAACAGGGGAGATTCCGAGTCAACTCGGTCAATTGGACAACCTTAATTATCTCAGTTTAATGGAAAACAAGCTCGAGGGTCACATTCCACCGTCATTATCTCAAATGGGTAACCTTCAAAATCTTGACTTGTCAAAGAACAAACTCAGTGGAGGAATTCCAGAAGAGTTTGGTAACATGCATCAGTTGAAATTCTTAGTTCTTGTTGGAAACCCCTTAAGTGGAAAAATTCCAAAAACTTTATGTTCCAATGCAACAAGTTTGGAGACTTTATTGATTTCAACGAATGGACTTTATGGTGAGATTCCATCTGAGTTGAGTCAATGTAAGTCATTGAAGCAAATTGATTTATCCCACAATCTTCTCAATGGAACAATTCCTCTTGAGATTTATGATTTGGTGAATTTAACAGATCTTTTGCTTCACAACAATAGTTTAATTGGTTCGCTTTCACCTTCCATAGGGAACTTAAGAAACTTGAAAACTCTTGCATTGTATCATAACAAGTTGCATGGTGCTTTGCCTAAGGAGATTGGGATGCTTGGGAAGATGGAGATTTTGTATCTTTATGATAATCAGTTTTTGGGGAATATACCGAATGAGATTGGTAATTGCTCAAATTTGAAAATGGTTGATTTCTTTGGTAACCGTTTTGGTGGAAGAGTTCCGATTACGATTGGGAGATTGAAGGAGTTGAGTTTTCTTCATATTAGGCAGAATGAGCTTGTTGGTGAGATTCCGGCTACGCTTGGGAACTGTCATAAATTGACTGTGCTTGATTTGGCGGATAACAACCTCTCTGGTGGAATTCCTGCTACGTTCGGGTACCTCAAAGATTTGCAGCAGTTCATGCTTTACAACAATTCTCTTGAAGGTGGTATTCCGCATCAAATGGCGAATGTAGCAAACTTGACAAGAGTTAATCTTTCAAAGAACAGATTGAATGGAAGTTTGGCTCCGTTGTGTAGCTCTAGAGATTTTCTTTCTTTTGATGTTACAGGTAATGAACTTGATGGCGAAATTCCTCCAAACTTGGGAAACTCTATGTCTCTCAAGAGGCTAAGATTAGGAGGTAACAAGTTTTCTGGTGAAATTCCGAGGACGTTGGGAAAAATCGTTGATCTTTCTTTGTTAGATCTCTCGGGAAATTCTCTTACAGGGCCAATACCAGGTGAACTATCTCTGTGTAATAAACTTTCCTCTGTTGATTTAAGCAATAACCTTCTTGTTGGACACGTACCGTCGTGGCTTGGTAATTTGCCTAGTTTAGGAAAGCTTAATCTTGCATTCAATCAGTTTTCCGGGCCTTTTCCACTAGGCTTATTCAAGTTACCTACATTGTTGGTTCTTTCTTTGAATAACAATTCTCTTAATGGAAGTCTCCCTGATGGTATTGGTGATCTCGATTCGCTTAATGTCCTTAGGCTTGAAAATAATAATTTTTCTGGACCGATTCCTCGTGCGATAGGTAAGTTGGGAAATCTTTATGAGCTCAATCTATCCAGAAATGTCTTTAGTGGTGACATACCAAATGAGATTGGAAGTCTTCAAAATCTCCAAACTGTTTTGGACTTGAGTTACAATAATCTCTCTGGCCAGCTTCCATCTTCTCTTGGTTCGTTGTCTAAATTAGAAGCACTTGATTTGTCTCACAATCAACTCACAGGAAAAGTTCCTCCAAACATAGGTGAAATGATTAGCTTGGATAAGCTTGATATCTCTTATAATAATTTTCAAGGTGCATTGGGTAAGCGATTCTCACGCTGGCCGTCTGAGGCGTTTGTAGGGAACTTTCATCTTTGTGGAGCCTCTCTCGGTAGCTGCGGTGGTTCTTCCCAAAATAAGCTTTCAGGGTTAAGTGAGACAGCTGTGGTCATAATCTCTGCAATTTCAACTCTAGCTGCAATTGTGATACTTGTTGTTGCAGTTAGAATCTTCTTGAGAAATAGGCAATATTTTTGGAGCAAAGATAGCGAATTAGCCTGTATTTTCTCTTCCTCTACATCACAAGCAAAAAAGCGGCTGCTGTTCCCAGTAAGTACTGCTGGAAAACGAGATTTCAGGTGGGAAGACATCATGGCTGCTACAAACAATTTGAGCGACGAATTCATAATCGGTGCTGGAGCTTCTGGAACTGTCTACAGAGTTGAATTGCCTACCGGCGAAACCGTGGCTGTCAAGAAGATTTCGTTGAAAGACGAATATCTGTTGCATAAAAGCTTTATCCGAGAAATAAAGACTTTGGGCAGGATTAAGCATCGACATTTGGTGAAACTGATCGGTTGTTGTAGCAATCGAAACAAAGGAAATGGTTGTAATCTGTTGATATACGAGTACATGGAAAACGGAAGTGTTTGGGATTGGTTACACGGAAACGCTCTCAAGTTAAAGCGAAACCTTGACTGGGAGACAAGGTTCAAAATCGCTTTAGGGTTAGCTCAAGGAATGGAGTATCTTCATCATGATTGCGTACCAATGCTCATTCACAGGGACATCAAATCCAGCAATATATTGCTAGATTCTAACATGGATGCACACTTGGGAGATTTTGGATTGGCAAAAGCACTCATCGAGAATCATGATTCTAATACTGAATCTACTTCTTGTTTTGCAGGCTCTTATGGTTACATAGCTCCAGAGTTTGGATACTCGCTAAAGGCGACAGAGAAAAGCGATGTGTACAGCATGGGAATTGTGCTAATGGAACTTGTGAGTGGAAAAATGCCAACAGATGAAGCTTTTAGAACAGGTATAGACATGGTGAGATGGGTGGAGAGGAACATCAACGCAAAAGGAACCGAGCGCGAGGAACTAATAGATCCCGAGTTGAAACCACTTTTACCTTTTGAAGAGTTTGCAGCATATCAAGTGCTTGAGATAGCTTTGCATTGCACCAAAACCGCACCGATGGAGAGACCAACATCAAGGCAAGTTTGTGACCTTCTTCAACATGTGTCCAAGAACAAAAAAGTGGAGTTTAAGAAGAAGATGGATTTGGATACTTACAACTGA 3771 0.4044 MATTMKTLPTLSLLLCFFSFVLLVLCSEDEIITKNVLLEVKSSFVNDPENVLENWSEDNTDYCTWRGVSCDSLHVVVGLNLSDSKLTGSISSSLSLLQNLLHLDLSTNHLVGPIPPSLSNLTKLESLLLYSNQLTGQIPIELGSLVSLQVLRIGDNGLTGEIPSSLGNLVNLVALGLASCKLTGLIPYQLGRLTELQNLILQDNELTGPIPSELGNCSSLVRFTASDNKLNGTIPSQLGQLRSLQILNLANNTLTGEIPSQLGQLDNLNYLSLMENKLEGHIPPSLSQMGNLQNLDLSKNKLSGGIPEEFGNMHQLKFLVLVGNPLSGKIPKTLCSNATSLETLLISTNGLYGEIPSELSQCKSLKQIDLSHNLLNGTIPLEIYDLVNLTDLLLHNNSLIGSLSPSIGNLRNLKTLALYHNKLHGALPKEIGMLGKMEILYLYDNQFLGNIPNEIGNCSNLKMVDFFGNRFGGRVPITIGRLKELSFLHIRQNELVGEIPATLGNCHKLTVLDLADNNLSGGIPATFGYLKDLQQFMLYNNSLEGGIPHQMANVANLTRVNLSKNRLNGSLAPLCSSRDFLSFDVTGNELDGEIPPNLGNSMSLKRLRLGGNKFSGEIPRTLGKIVDLSLLDLSGNSLTGPIPGELSLCNKLSSVDLSNNLLVGHVPSWLGNLPSLGKLNLAFNQFSGPFPLGLFKLPTLLVLSLNNNSLNGSLPDGIGDLDSLNVLRLENNNFSGPIPRAIGKLGNLYELNLSRNVFSGDIPNEIGSLQNLQTVLDLSYNNLSGQLPSSLGSLSKLEALDLSHNQLTGKVPPNIGEMISLDKLDISYNNFQGALGKRFSRWPSEAFVGNFHLCGASLGSCGGSSQNKLSGLSETAVVIISAISTLAAIVILVVAVRIFLRNRQYFWSKDSELACIFSSSTSQAKKRLLFPVSTAGKRDFRWEDIMAATNNLSDEFIIGAGASGTVYRVELPTGETVAVKKISLKDEYLLHKSFIREIKTLGRIKHRHLVKLIGCCSNRNKGNGCNLLIYEYMENGSVWDWLHGNALKLKRNLDWETRFKIALGLAQGMEYLHHDCVPMLIHRDIKSSNILLDSNMDAHLGDFGLAKALIENHDSNTESTSCFAGSYGYIAPEFGYSLKATEKSDVYSMGIVLMELVSGKMPTDEAFRTGIDMVRWVERNINAKGTEREELIDPELKPLLPFEEFAAYQVLEIALHCTKTAPMERPTSRQVCDLLQHVSKNKKVEFKKKMDLDTYN 1256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03128 1256 SMART serkin_6 952 1240 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g03128 1256 Pfam Leucine rich repeat N-terminal domain 35 71 IPR013210 -
Vivi6g03128 1256 SUPERFAMILY L domain-like 581 834 - -
Vivi6g03128 1256 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 189 282 - -
Vivi6g03128 1256 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 913 1032 - -
Vivi6g03128 1256 FunFam Uncharacterized protein 382 475 - -
Vivi6g03128 1256 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 283 381 - -
Vivi6g03128 1256 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 479 1237 - -
Vivi6g03128 1256 PRINTS Leucine-rich repeat signature 794 807 - -
Vivi6g03128 1256 PRINTS Leucine-rich repeat signature 292 305 - -
Vivi6g03128 1256 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 476 572 - -
Vivi6g03128 1256 ProSitePatterns Protein kinases ATP-binding region signature. 958 981 IPR017441 GO:0005524
Vivi6g03128 1256 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 31 188 - -
Vivi6g03128 1256 Pfam Leucine rich repeat 508 567 IPR001611 GO:0005515
Vivi6g03128 1256 Pfam Leucine rich repeat 267 326 IPR001611 GO:0005515
Vivi6g03128 1256 Pfam Leucine rich repeat 747 807 IPR001611 GO:0005515
Vivi6g03128 1256 Gene3D Ribonuclease Inhibitor 33 186 IPR032675 -
Vivi6g03128 1256 ProSiteProfiles Protein kinase domain profile. 952 1240 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g03128 1256 Pfam Protein kinase domain 957 1232 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g03128 1256 Gene3D Ribonuclease Inhibitor 379 475 IPR032675 -
Vivi6g03128 1256 SUPERFAMILY L domain-like 36 331 - -
Vivi6g03128 1256 Gene3D Ribonuclease Inhibitor 573 865 IPR032675 -
Vivi6g03128 1256 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 573 865 - -
Vivi6g03128 1256 Gene3D Transferase(Phosphotransferase) domain 1 1033 1255 - -
Vivi6g03128 1256 SUPERFAMILY Protein kinase-like (PK-like) 930 1235 IPR011009 -
Vivi6g03128 1256 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1080 1092 IPR008271 GO:0004672|GO:0006468
Vivi6g03128 1256 Gene3D Ribonuclease Inhibitor 476 572 IPR032675 -
Vivi6g03128 1256 SMART LRR_typ_2 482 506 IPR003591 -
Vivi6g03128 1256 SMART LRR_typ_2 97 121 IPR003591 -
Vivi6g03128 1256 SMART LRR_typ_2 745 769 IPR003591 -
Vivi6g03128 1256 SMART LRR_typ_2 794 818 IPR003591 -
Vivi6g03128 1256 SMART LRR_typ_2 434 458 IPR003591 -
Vivi6g03128 1256 SMART LRR_typ_2 145 169 IPR003591 -
Vivi6g03128 1256 SMART LRR_typ_2 241 265 IPR003591 -
Vivi6g03128 1256 SMART LRR_typ_2 697 721 IPR003591 -
Vivi6g03128 1256 SMART LRR_typ_2 193 217 IPR003591 -
Vivi6g03128 1256 SMART LRR_typ_2 289 312 IPR003591 -
Vivi6g03128 1256 SMART LRR_typ_2 386 410 IPR003591 -
Vivi6g03128 1256 SUPERFAMILY L domain-like 282 571 - -
Vivi6g03128 1256 Gene3D Phosphorylase Kinase; domain 1 914 1032 - -
Vivi6g03128 1256 FunFam Leucine-rich repeat receptor-like protein kinase 1033 1252 - -
Vivi6g03128 1256 Gene3D Ribonuclease Inhibitor 187 378 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03128 Vivi-Chr6 120338472 120342904 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03128 566 837 Receptor kinase-like Gene Family AT1G73080 33.442 4.82e-33 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vivi6g03128 Pkinase 2.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03128 - - gmx:100819046 1661.74