Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03123 ATGGCTTCTACCACCAATGATCCAGATTTTGCATTTTTGGAACATGTTCAAGAATACCTTCTTTGTGATGATTCCAGTTTTCAAACATCTTATCAATCTTTTTCAAGCCCTAAGAGTGATAGTGATTCAGACAAATCTGTAGGGGCTGTTGAGGTTAGCGTAGCTCCTGTGTCATGGAAGCGGTACAAGGGCGTGAGGCGTAGGCCGTGGGGGAAGTTTGCGGCGGAGATCAGAGATCCAAAAAAGAATGGCGCTAGGGTTTGGTTAGGGACTTATTTGACCGAGGAAGAAGCAGCTTTGGCTTATGAGAAAGCTGCTTTCAAGATGCGTGGTCATAAAGCCAAGGTTAATTTTCCCCACCTTATTGGCAACGACGTGTCTATGTTAGATACGTCAGAGCCAAAAAGGGAGGTGGTTTTGAAACGGGACTCACCCGAGCCTTCTTCGTCTGAGGGAAGTTGTGAGTCATCGTCACCGGGGTCAAAGAGGAGGAGGGGTATGGCTGACCTACTTAACAAATTAGCCAAGAATAGAAGTCAAGCCATGGTGGTTGAAATTGGAAAGATCTCACAGGAAAATGACTTTGAGCAATGGGTGAATGAGTTGAGTGATTGCACTCTAATCTGGAGCTCCTAG 636 0.4575 MASTTNDPDFAFLEHVQEYLLCDDSSFQTSYQSFSSPKSDSDSDKSVGAVEVSVAPVSWKRYKGVRRRPWGKFAAEIRDPKKNGARVWLGTYLTEEEAALAYEKAAFKMRGHKAKVNFPHLIGNDVSMLDTSEPKREVVLKRDSPEPSSSEGSCESSSPGSKRRRGMADLLNKLAKNRSQAMVVEIGKISQENDFEQWVNELSDCTLIWSS 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03123 211 MobiDBLite consensus disorder prediction 146 160 - -
Vivi6g03123 211 SUPERFAMILY DNA-binding domain 61 120 IPR016177 GO:0003677
Vivi6g03123 211 Gene3D AP2/ERF domain 60 120 IPR036955 GO:0003700|GO:0006355
Vivi6g03123 211 Pfam AP2 domain 61 112 IPR001471 GO:0003700|GO:0006355
Vivi6g03123 211 SMART rav1_2 61 125 IPR001471 GO:0003700|GO:0006355
Vivi6g03123 211 MobiDBLite consensus disorder prediction 141 165 - -
Vivi6g03123 211 CDD AP2 60 121 IPR001471 GO:0003700|GO:0006355
Vivi6g03123 211 ProSiteProfiles AP2/ERF domain profile. 61 119 IPR001471 GO:0003700|GO:0006355
Vivi6g03123 211 PANTHER DNA-BINDING DOMAIN 43 173 IPR044808 GO:0003700|GO:0009873
Vivi6g03123 211 PRINTS Ethylene responsive element binding protein signature 62 73 IPR001471 GO:0003700|GO:0006355
Vivi6g03123 211 PRINTS Ethylene responsive element binding protein signature 85 101 IPR001471 GO:0003700|GO:0006355
Vivi6g03123 211 FunFam Ethylene-responsive transcription factor 2 60 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03123 Vivi-Chr6 120084523 120085998 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03123 61 151 AP2-EREBP Transcription Factor Family AT2G44840 67.033 4.77e-36 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi6g03123 AP2 2.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03123 K09286 - gmx:102663872 207.223