Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03122 ATGTGCCAAATTTCTAGTAGTGGTGACAATGATTCAGACACAATTATAGAGCGGAGGGAAGTAAGCACGCCTCCTATATGGAAGCGGTACAAGGGCGTGAGGCGTAGGCCATGGGGGAAGTTCGCGGCAGAGATCAGAGATCCAAAAAAGAATGGTGCTAGAGTTTGGTTAGGAACTTATTTGACCGAGGAGGAGGCAGCTTTGGCTTACGACAAAGCTGCTTTCAAGATGCGTGGCCAAAAAGCTAAGGTTAATTTTCCCCATCTCATTGGCAATGACGTGTCTAAGTCAGTACCGGAGAGGGAAGTGGTTTCAGTGGTTTTGAAACGGGACTCGCCAGAGTCTTCATCGTCCGAGGGAAGTTGCGAGTCATTGTCACCTGGATCGAAGAAGAGGAAGGGCATGGCTGATCTACTTAACAAATTAGCGAAGAGTCGATGTAAAGCTATGGTGGTTGAGAATGAGAAATCCTTACAAGAAAATGATTTTGAGCAATGGGTGAATGGGTTGAATGATTGCACTCTAATCTGGAGCTCCTAG 540 0.4648 MCQISSSGDNDSDTIIERREVSTPPIWKRYKGVRRRPWGKFAAEIRDPKKNGARVWLGTYLTEEEAALAYDKAAFKMRGQKAKVNFPHLIGNDVSKSVPEREVVSVVLKRDSPESSSSEGSCESLSPGSKKRKGMADLLNKLAKSRCKAMVVENEKSLQENDFEQWVNGLNDCTLIWSS 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03122 179 FunFam Ethylene-responsive transcription factor 2 28 88 - -
Vivi6g03122 179 PANTHER DNA-BINDING DOMAIN 26 149 IPR044808 GO:0003700|GO:0009873
Vivi6g03122 179 SUPERFAMILY DNA-binding domain 29 88 IPR016177 GO:0003677
Vivi6g03122 179 SMART rav1_2 29 93 IPR001471 GO:0003700|GO:0006355
Vivi6g03122 179 CDD AP2 28 89 IPR001471 GO:0003700|GO:0006355
Vivi6g03122 179 Pfam AP2 domain 29 79 IPR001471 GO:0003700|GO:0006355
Vivi6g03122 179 MobiDBLite consensus disorder prediction 110 125 - -
Vivi6g03122 179 ProSiteProfiles AP2/ERF domain profile. 29 87 IPR001471 GO:0003700|GO:0006355
Vivi6g03122 179 MobiDBLite consensus disorder prediction 108 133 - -
Vivi6g03122 179 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Vivi6g03122 179 PRINTS Ethylene responsive element binding protein signature 69 89 IPR001471 GO:0003700|GO:0006355
Vivi6g03122 179 Gene3D AP2/ERF domain 28 88 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03122 Vivi-Chr6 120071420 120072437 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03122 29 119 AP2-EREBP Transcription Factor Family AT2G44840 65.934 2.38e-36 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vivi6g03122 AP2 7.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03122 K09286 - gmx:102663872 198.749