Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03118 ATGGCTTCCACTACCACTGATTCAGATTTTGCATATTTGGAAAACATTCAACAATACCTTCTTTGTGATGATTCAAGCTTTCTAGCATCTTGCCAGCCTTTTTCAAGCCCTAAAAGTGACAATGATTCAGACAAATCTGTAGGAACGAGTGAGGTATGCGCGCCTCCGGTGTCTTGGAAGCGGTACAAGGGAGTGAGGCGTAGGCCGTGGGGAAAATTTGCGGCAGAAATCAGAGATCCAAAGAAGAATGGCGCTCGGGTTTGGTTAGGAACTTATTTGACCGAGGAGGAAGCTGCTTTGGCTTACGACAAAGCTGCTTTCAAGATGCGTGGCCATAAGGCCAAGGTTAATTTTCCCCACCTCATTGGCAACGACGTGTCTACATCGGAGCCAGAAAGGGAGGTGGTTTTGAAACGAGACTCACCCGAGCCTTCTTCTTCAGAGGGAAGTTGGGAGTCATCGTCACCTGGATCGAAGAGGAGGAGGGGTATGGCTGACCTACTTAACAAATTAGCCAAGAGTAGAAGTCAAGCCATGGTAGTTGAGAATAAAAAGTCCTTACAAGAAAATGATTTTGAGCAATGGGTGAATGAGTTAAATGATTGCACTCTAATTTGGAGTTCATAG 627 0.4561 MASTTTDSDFAYLENIQQYLLCDDSSFLASCQPFSSPKSDNDSDKSVGTSEVCAPPVSWKRYKGVRRRPWGKFAAEIRDPKKNGARVWLGTYLTEEEAALAYDKAAFKMRGHKAKVNFPHLIGNDVSTSEPEREVVLKRDSPEPSSSEGSWESSSPGSKRRRGMADLLNKLAKSRSQAMVVENKKSLQENDFEQWVNELNDCTLIWSS 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03118 208 SMART rav1_2 61 125 IPR001471 GO:0003700|GO:0006355
Vivi6g03118 208 Coils Coil 164 184 - -
Vivi6g03118 208 PRINTS Ethylene responsive element binding protein signature 62 73 IPR001471 GO:0003700|GO:0006355
Vivi6g03118 208 PRINTS Ethylene responsive element binding protein signature 101 121 IPR001471 GO:0003700|GO:0006355
Vivi6g03118 208 FunFam Ethylene-responsive transcription factor 2 60 120 - -
Vivi6g03118 208 PANTHER DNA-BINDING DOMAIN 45 183 IPR044808 GO:0003700|GO:0009873
Vivi6g03118 208 Gene3D AP2/ERF domain 60 120 IPR036955 GO:0003700|GO:0006355
Vivi6g03118 208 CDD AP2 60 121 IPR001471 GO:0003700|GO:0006355
Vivi6g03118 208 MobiDBLite consensus disorder prediction 143 157 - -
Vivi6g03118 208 Pfam AP2 domain 61 112 IPR001471 GO:0003700|GO:0006355
Vivi6g03118 208 SUPERFAMILY DNA-binding domain 61 120 IPR016177 GO:0003677
Vivi6g03118 208 ProSiteProfiles AP2/ERF domain profile. 61 119 IPR001471 GO:0003700|GO:0006355
Vivi6g03118 208 MobiDBLite consensus disorder prediction 124 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03118 Vivi-Chr6 120017763 120018804 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03118 25 148 AP2-EREBP Transcription Factor Family AT2G44840 57.258 1.34e-38 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi6g03118 AP2 3.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03118 K09286 - gmx:102663872 240.736