Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03117 ATGGCTTCCTCCACCAATGACTCAGATTTTGCATATTTGGAACACATTCTCTTTGATGATTCCAGCATTGTTACATCTCAACAACCTTTCCCTAACCCTAAAAGTGATAATGATTCAGACAGTGCTGTGAATGTGCGTGAAGTAAGCACGCCTCCGATATGGAAGCGATACAAGGGCGTGAGGCGAAGGCCATGGGGAAAATTTGCGGCAGAGATAAGGGATCCGAAAAAGAATGGCGCTAGAGTTTGGTTAGGAACTTATTTGACCGAGGAGGAAGCAGCATTGGCTTATGATAATGCTGCTTTCAAGATGCGTGGCCAGAAAGCCAAGCTTAATTTTCCTCACCTCATTGGCAACGATGTGTCCACATCGAAGCCAAAGAGGGAGGTGGTTTTAAAACACGACTCTCTAGAACTTTCTTCGTCTGAAGGAAGTTGTGAGTCGTCGTCACTCGGATCGAAGAAGAGGAGGGGTATGGCTGATCTACTTAACAAATTAGCTAAGAATAGAAGTCAAGCCATGGTGGTTGAGAATGAAAAGTCCTTACAAGAAGATGATTTTGAGCAATGGGTGAATGAGTTGAATGATTGCACTACAATATGGAGCTCATAG 612 0.4395 MASSTNDSDFAYLEHILFDDSSIVTSQQPFPNPKSDNDSDSAVNVREVSTPPIWKRYKGVRRRPWGKFAAEIRDPKKNGARVWLGTYLTEEEAALAYDNAAFKMRGQKAKLNFPHLIGNDVSTSKPKREVVLKHDSLELSSSEGSCESSSLGSKKRRGMADLLNKLAKNRSQAMVVENEKSLQEDDFEQWVNELNDCTTIWSS 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03117 203 CDD AP2 55 116 IPR001471 GO:0003700|GO:0006355
Vivi6g03117 203 Pfam AP2 domain 56 106 IPR001471 GO:0003700|GO:0006355
Vivi6g03117 203 SUPERFAMILY DNA-binding domain 56 115 IPR016177 GO:0003677
Vivi6g03117 203 FunFam Ethylene-responsive transcription factor 2 55 115 - -
Vivi6g03117 203 ProSiteProfiles AP2/ERF domain profile. 56 114 IPR001471 GO:0003700|GO:0006355
Vivi6g03117 203 PANTHER DNA-BINDING DOMAIN 39 177 IPR044808 GO:0003700|GO:0009873
Vivi6g03117 203 PRINTS Ethylene responsive element binding protein signature 96 116 IPR001471 GO:0003700|GO:0006355
Vivi6g03117 203 PRINTS Ethylene responsive element binding protein signature 57 68 IPR001471 GO:0003700|GO:0006355
Vivi6g03117 203 SMART rav1_2 56 120 IPR001471 GO:0003700|GO:0006355
Vivi6g03117 203 Gene3D AP2/ERF domain 55 115 IPR036955 GO:0003700|GO:0006355
Vivi6g03117 203 MobiDBLite consensus disorder prediction 24 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03117 Vivi-Chr6 119971859 119972482 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03117 56 119 AP2-EREBP Transcription Factor Family AT2G44840 82.812 2.56e-35 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi6g03117 AP2 9.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03117 K09286 - gmx:102663872 231.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g03117 6 119971859 119972482 Vivi6g03117 6 119971859 119972482 ECH
Vivi7g03320 7 98693994 98694800 Vivi6g03117 6 119971859 119972482 PCT