Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03116 ATGTTGTTTTCTACCAACAAAGATTCAGAGTTTACATATTTAGAACACATTCAACAATACCTTCTTCATGATGATTCCAACATCCTCACATCAGGTCAAAATATCCAAAGCCCAAACGATATTTCAAACACAACTGCATCTCCACGTGAAGTCCACGCGCCTCCTGCATGGAAGCGCTACCGGGCACTACAAAAAATTGGGGGCGTGAGGCGTAGGCTGTGGGGAAAGTTTGCGGCCGAGATCAGAGATCCGAAGAAGAATGGTGCTAGGGTTTGGCTTGGAACTTATTTGACTGAAGAGGAAGCAGGTATGGCTTATGATAAAGCTGCTTTTAAGATGCGTGGCCGAAAGGCCAAGCTCAATTTTCCTCATCTTATTGGCTCTGATGTGTACTTTGACGTGTACACGTCAAAGCCAAAAAGAGAGAGGACTTTGAAGCGTGAGTTGCTCGAAGTTTCTTTTTCATCTGATGATTGCTATGAGTCATTGTCACAAGGTTCAAAGAGGAAGAGGAGCATGGCTATTCTACTTAACAAATTAGCCAAGAATAGAAGCCAAGCTATGGTGGTTGAAAGTGAAATGGCTTCACAAGAAAATGCTGTTGAGCAATGGTTGAATGAGTTGAATGATTGCTCTCTAATGTGGTGCTCTTAG 654 0.4297 MLFSTNKDSEFTYLEHIQQYLLHDDSNILTSGQNIQSPNDISNTTASPREVHAPPAWKRYRALQKIGGVRRRLWGKFAAEIRDPKKNGARVWLGTYLTEEEAGMAYDKAAFKMRGRKAKLNFPHLIGSDVYFDVYTSKPKRERTLKRELLEVSFSSDDCYESLSQGSKRKRSMAILLNKLAKNRSQAMVVESEMASQENAVEQWLNELNDCSLMWCS 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03116 217 PANTHER DNA-BINDING DOMAIN 52 191 IPR044808 GO:0003700|GO:0009873
Vivi6g03116 217 PRINTS Ethylene responsive element binding protein signature 66 77 IPR001471 GO:0003700|GO:0006355
Vivi6g03116 217 PRINTS Ethylene responsive element binding protein signature 105 125 IPR001471 GO:0003700|GO:0006355
Vivi6g03116 217 SMART rav1_2 65 129 IPR001471 GO:0003700|GO:0006355
Vivi6g03116 217 SUPERFAMILY DNA-binding domain 67 124 IPR016177 GO:0003677
Vivi6g03116 217 Pfam AP2 domain 65 115 IPR001471 GO:0003700|GO:0006355
Vivi6g03116 217 FunFam Ethylene-responsive transcription factor 2 65 124 - -
Vivi6g03116 217 Coils Coil 187 207 - -
Vivi6g03116 217 Gene3D AP2/ERF domain 67 124 IPR036955 GO:0003700|GO:0006355
Vivi6g03116 217 CDD AP2 58 125 IPR001471 GO:0003700|GO:0006355
Vivi6g03116 217 ProSiteProfiles AP2/ERF domain profile. 65 123 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03116 Vivi-Chr6 119965596 119969536 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03116 45 141 AP2-EREBP Transcription Factor Family AT2G44840 61.538 1.37e-34 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi6g03116 AP2 1.2e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03116 K09286 - gmx:102663872 232.646
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g03321 7 98700605 98701205 Vivi6g03116 6 119965596 119969536 PCT