Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03087 ATGCTACCCTCTAACTTCATTACGAGTCTGTTGATAATTCTCTTTGTACTTTCAACACTTTCATGGCCACAAGCTATAGCTGAAGCCACTGAAACTGAATCACCGGCTTTGTTAAAATGGAAACATAGCTTTGATAACCACAGCCAAACTCTCTTATCAACTTGGAAAAACACCACAAGTCCATGCAAATGGCAAGGAATTCAATGTCATAAATTAAATTCAGTTTCTGCCATAAACCTTGAAAATTTTGGACTAAAAGGTACACTTCACACTCTCACTTTTTCTTCACTACCAAACCTCATAACCCTAAATATCTACAATAACCAATTTTATGGAACCATTCCTCCACAAATTGGTAACATGTCAAAAATAAACACATTGAATTTTTCTGAAAACCCTATTGATGGTTCCATTCCTCAAGAAGTTTTCACTTTGAAAAGTTTACAAAACCTTGATTTTTCATTTTGTAAACTAAGTGGAGCAATTTCTAGTTCTATAGGAAATTTATCCAATTTATCGTATCTAGATTTAAGAAGGAATGATTTCTCTGGTGGATCTATTCCTCCTGAGATTGGAAAATTGAACAAATTATGGTTTCTAGCAATTTCAAATTGTGGCCTAATTGGTTCAATTCCACAAGAAATTGGGCTTTTGACAAACCTTACTCTTATTGAATTGTCATCGAATTCTCTATCTGGTGTTGTCCCTGAAACCATAGGTAACCTGAGTAAATTGAATCAACTTTACCTTTTTAATAACACCAAGTTGTCTGGTCCAATTCCACAATCCTTGTGGAACTTGTCTAGCTTGAATCTGATTTATTTTTCAAAAATGAATCTTTCTGGTTCAATCTCTGATTCTATACAAAACTTGGTTAATTTGAATTCACTTGCACTTGATAGCAATCGCCTTTCTGGATCCATTCCTTCCACAATTGGGAACTTGAAAAATCTTATTTTTTTGTGGTTGTTGAATAATCGTCTTTCTGGATCAATTCCTGCCTCTATAGGTAATTTGATCAATTTGGAAGTTCTTAGTCTCCAAGTAAATAATCTCTCTGGAACAATTCCAGATTCATTTGGAAATTTGAAGAAGCTCAGTGTTTTTGAAGTAGCTTTCAATAAACTTCACGGTAGAATTCCAAATGGACTTTTCAATAACAATTGGGATACCTTTGTTGTGTCTCAGAATGATTTTGTTGGCCATTTGCCGTCTCAAATATGCTCTGGTGGAAGATTACAGTACTTAAATGCTAATCAGAATCGTTTCACTGGTTCGGTGCCAACAAGTTTGAAAAATTGTTCTAGCCTTGTAAGAATCAGGCTCGAGGAGAATCAAATCGAAGGAGATATATCACGAGATTTTGGTGTATATCCGAAATTGCAGTATCTTGATATAAGTAAAAATAAATTTCAGGGACACATTTCAACAAATTGGGAAAAGAGTCTTGATCTCCTTACTTTCAAGGCATCTAACAACAATATTTCCGGTGTTATACCATTAGAACTTATTGGTTTAACCAAACTCGGTGGACTTCACCTTTCTTCAAATCAATTGACGGGGAAACTTCCAAAGGAATTAGGAGAGATGACAACATTAGTTGAACTCAAGATTAGTAACAATCAATTCACCGGTAACATTCCAACAGAAATTGGAATGCTACAAAGACTTGAAATGTTGGATCTCGGTGGAAACGAGTTGAGTGGAACGATACCGGAAGAAGTAGCGAGGCTACCGAGGTTACGAATGTTGAATTTAAGCAGAAATAAAATTGAAGGAAGTATTCCATATAAGTTTGGTTTAGCTCTTGAGTCACTTGATCTCAGTGGCAATTTTTTGAATGGAAAAATACCAACAACTCTTGAAGGTTTGGTGCAGTTGTCAATGTTGAATCTCTCACATAATATGCTTTCAGGGACCATTCCTCAAAATTTTGGAAGGAGTTTGGTTTTCATTAACATATCAGACAACCAGTTAGAAGGTCCACTTCCGAAAATTCCAGCCTTTCTTAATGCTCCATTTGAATCATTCAAACACAACAAAGGCTTATGTGGAAATATCACAGGGTTAACTTCTTGTGCAACACGCCATAGTCGAAAGAGCAAAAATGTCTTTCGATCTGTATTCATTGCTATAGGAGCTCTGATACTAGTATTGTGTGGTATTGGAATTTCAATCTACATTTTGTGTCTCAGAAAATCACCAAAGAAAGAAAGTCAATCTGAAGAAGCACAAAGGGGAGTACTATTTTCAATTTGGAGTCATGATGGGAAAATGATGTTTGAAAATATCATTGAAGCTACTGAGAATTTTGATGACAAACATCTCATTGGAGTTGGGAGTCAAGGAAATGTTTACAAGGCAGAGTTGGCTACGGATTTGGTTGTTGCTGTTAAGAAGTTTCATTTGGTAACAGACGAAACAAAGTCATATTTCAGTTCAAAGTCTTTTACGAGTGAGATTGAAGCCTTGACAGGAATCAAACACAGAAACATCATAAAGCTTCACGGGTTTTGCTCACATTCTAAGTTCTCATTCTTGGTTTACAAGTTCATGGAAGGCGGAAGCTTAGATCAAATGCTAAACAATGACACACAGGCTGCTGCATTTGATTGGGAAAAGAGGATGAATGTTGTTAAAGGTGTAGCCAATGCTTTGTCCTACCTGCATCATGATTGCTCGCCTCCAATTATTCATCGCGACATATCGAGCAAAAATGTTCTTCTTGATCTTGACTATGAAGCTCATGTCTCCGACTTCGGGACGGCTAAGTTTCTAAAGCCGGGCTTACTTAGTTATACCGAATTTGCAGGAACCTTTGGGTATGCAGCTCCAGAATTGGCACAAACAATGGAAGTGAATGAGAAATGTGATGTATATAGCTTTGGAGTTCTTGCATTGGAAATCATAATGGGAAAACATCCAGGAGATCTCATTTCATTGTTTTTGTCACCATCGACAAGATCGACGGCTGATAATATGCTGTTGATAGATGTTTTAGATCAACGATCTGAACAAGTTAAGAAACCAATTGATGAAGAAGTGATCTTGATTGCAAGGTTGGCATTGGCTTGCTTGAGTCAAGAACCACGTTCTAGACCAACCATGGATCAAGTGTCAAAGATGCTTGCAATAGGAAAAACACCTTTGGGGAACCAACTCCACATGATTAGACTAGGACAACTAGAATAA 3192 0.3669 MLPSNFITSLLIILFVLSTLSWPQAIAEATETESPALLKWKHSFDNHSQTLLSTWKNTTSPCKWQGIQCHKLNSVSAINLENFGLKGTLHTLTFSSLPNLITLNIYNNQFYGTIPPQIGNMSKINTLNFSENPIDGSIPQEVFTLKSLQNLDFSFCKLSGAISSSIGNLSNLSYLDLRRNDFSGGSIPPEIGKLNKLWFLAISNCGLIGSIPQEIGLLTNLTLIELSSNSLSGVVPETIGNLSKLNQLYLFNNTKLSGPIPQSLWNLSSLNLIYFSKMNLSGSISDSIQNLVNLNSLALDSNRLSGSIPSTIGNLKNLIFLWLLNNRLSGSIPASIGNLINLEVLSLQVNNLSGTIPDSFGNLKKLSVFEVAFNKLHGRIPNGLFNNNWDTFVVSQNDFVGHLPSQICSGGRLQYLNANQNRFTGSVPTSLKNCSSLVRIRLEENQIEGDISRDFGVYPKLQYLDISKNKFQGHISTNWEKSLDLLTFKASNNNISGVIPLELIGLTKLGGLHLSSNQLTGKLPKELGEMTTLVELKISNNQFTGNIPTEIGMLQRLEMLDLGGNELSGTIPEEVARLPRLRMLNLSRNKIEGSIPYKFGLALESLDLSGNFLNGKIPTTLEGLVQLSMLNLSHNMLSGTIPQNFGRSLVFINISDNQLEGPLPKIPAFLNAPFESFKHNKGLCGNITGLTSCATRHSRKSKNVFRSVFIAIGALILVLCGIGISIYILCLRKSPKKESQSEEAQRGVLFSIWSHDGKMMFENIIEATENFDDKHLIGVGSQGNVYKAELATDLVVAVKKFHLVTDETKSYFSSKSFTSEIEALTGIKHRNIIKLHGFCSHSKFSFLVYKFMEGGSLDQMLNNDTQAAAFDWEKRMNVVKGVANALSYLHHDCSPPIIHRDISSKNVLLDLDYEAHVSDFGTAKFLKPGLLSYTEFAGTFGYAAPELAQTMEVNEKCDVYSFGVLALEIIMGKHPGDLISLFLSPSTRSTADNMLLIDVLDQRSEQVKKPIDEEVILIARLALACLSQEPRSRPTMDQVSKMLAIGKTPLGNQLHMIRLGQLE 1063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03087 1063 FunFam MDIS1-interacting receptor like kinase 2 852 1049 - -
Vivi6g03087 1063 SMART LRR_typ_2 554 577 IPR003591 -
Vivi6g03087 1063 SMART LRR_typ_2 624 648 IPR003591 -
Vivi6g03087 1063 SMART LRR_typ_2 97 121 IPR003591 -
Vivi6g03087 1063 SMART LRR_typ_2 578 601 IPR003591 -
Vivi6g03087 1063 SMART LRR_typ_2 363 387 IPR003591 -
Vivi6g03087 1063 SMART LRR_typ_2 339 362 IPR003591 -
Vivi6g03087 1063 SMART LRR_typ_2 506 530 IPR003591 -
Vivi6g03087 1063 SMART LRR_typ_2 291 315 IPR003591 -
Vivi6g03087 1063 SMART LRR_typ_2 169 194 IPR003591 -
Vivi6g03087 1063 SMART LRR_typ_2 218 241 IPR003591 -
Vivi6g03087 1063 Gene3D Phosphorylase Kinase; domain 1 732 851 - -
Vivi6g03087 1063 Pfam Leucine rich repeat N-terminal domain 33 69 IPR013210 -
Vivi6g03087 1063 Pfam Protein kinase domain 772 1041 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g03087 1063 ProSitePatterns Tyrosine protein kinases specific active-site signature. 897 909 IPR008266 GO:0004672|GO:0006468
Vivi6g03087 1063 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 386 697 - -
Vivi6g03087 1063 Gene3D Ribonuclease Inhibitor 29 184 IPR032675 -
Vivi6g03087 1063 Gene3D Ribonuclease Inhibitor 278 391 IPR032675 -
Vivi6g03087 1063 Pfam Leucine Rich Repeat 341 363 IPR001611 GO:0005515
Vivi6g03087 1063 Pfam Leucine Rich Repeat 603 624 IPR001611 GO:0005515
Vivi6g03087 1063 Gene3D Ribonuclease Inhibitor 392 696 IPR032675 -
Vivi6g03087 1063 ProSiteProfiles Protein kinase domain profile. 771 1045 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g03087 1063 Pfam Leucine rich repeat 532 591 IPR001611 GO:0005515
Vivi6g03087 1063 Gene3D Transferase(Phosphotransferase) domain 1 852 1049 - -
Vivi6g03087 1063 FunFam Nuclear pore complex protein NUP107 30 185 - -
Vivi6g03087 1063 PANTHER LEUCINE RICH REPEAT KINASE 2 391 1046 - -
Vivi6g03087 1063 SUPERFAMILY RNI-like 356 661 - -
Vivi6g03087 1063 SMART LRR_sd22_2 218 244 - -
Vivi6g03087 1063 SMART LRR_sd22_2 600 626 - -
Vivi6g03087 1063 SMART LRR_sd22_2 554 577 - -
Vivi6g03087 1063 SMART LRR_sd22_2 315 341 - -
Vivi6g03087 1063 SMART LRR_sd22_2 145 171 - -
Vivi6g03087 1063 Gene3D Ribonuclease Inhibitor 185 277 IPR032675 -
Vivi6g03087 1063 SUPERFAMILY Protein kinase-like (PK-like) 756 1043 IPR011009 -
Vivi6g03087 1063 SUPERFAMILY RNI-like 78 386 - -
Vivi6g03087 1063 FunFam Leucine-rich repeat receptor protein kinase MSP1 734 851 - -
Vivi6g03087 1063 FunFam MDIS1-interacting receptor like kinase 2 isoform A 282 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03087 Vivi-Chr6 118778404 118781857 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03087 10 945 Receptor kinase-like Gene Family AT4G08850 44.351 0.0 708
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vivi6g03087 Pkinase 8.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03087 - - gmx:100814634 1292.72