Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03086 ATGCTACCACCCACCTTCATCATGATTCTCTTCATAATTCTCTTTGTACTTTCAACACTTTCATTGCCACAATCTATAGCTGAAGCCACTGAAACTGAATCACAGGCTTTGTTAAAATGGAAACATACCTTTGATAACCAAACCCAAACTCTCTTATCAACTTGGAAAAACACCACTAATCCATGCACATGGAGAGGAATCCAATGTCACAAATCCAATTCAGTTTCAACCATAAACCTTGAAAATTTTGGACTTAAAGGTACACTTCACTCACTCACTTTTTCCTCACTCCCTAATCTCACAATCTTGAACATATATGGTAACCAATTTTATGGAACCATTCCTCCACAGATTGGAAACATGTCAAAAATAATCACATTGAATTTTTCTCAAAATTCTATTGATGGTTCCATTCCTCAAGAACTTTTCACTTTGAAAAGTTTACAAAATGTTGATTTCTCATTTTGTAAACTAAGTGGAGGAATTTCTAGCTCTATAGCAAATTTAACCAATTTATTGTACCTAGATTTAGGTCACAATGATTTTTCTGGTGGATTTATTCCTCCTGAGATTGGAAAATTGAACAAATTATGGTTTCTATCAATTCCAGAAAGTAAACTAATTGGTTCAATTCCACAACAAATAGGGCTTTTGACAAACCTTACTTATATTGATTTGTCATTGAATTCTCTATCTGGTGTTATTCCTGAAACCATAGGTAATCTGAGTAAATTGAATATACTTGTACTTTCAAATAACACCAAGTTGTCTGGTCCAATTCCACAATCCTTGTGGAACTTGTCTAGTTTGAATGTGATTTACTTTGATAAAATGAATCTTTCTGGTTCAATCTCTGATTCTATACAAAACTTGGTTAATTTGAATCAACTTGCACTTGATCTCAATCGCCTTTCGGGATCCATTCCTTCCACAATTGGAAAGTTGAAAAATCTTGTTACTTTGTATTTGTCGACTAATCATCTCACTGGATCGATTCCTGAGTCGATAGGGAATTTGATCAATTTGCAAATTCTTAGTCTCCAAGAAAACAATCTGACTGGAACAATTCCAGAGTCGATTGGAAATTTGAAGTGGCTCACTACTTTTGAAGTAGCTACTAATAAACTTCATGGTAGAATTCCAGATGGACTTTATAACATTACCAATTGGTATTCCTTTGTTGTGTCTGGGAATGCTTTTGTTGGTCATTTGCCGTCTCGAATATGCTCTGGTGGAAAATTAAGGTACTTAAATGCGGATTCCAACCGTTTCACCGGTCCTGTGCCAACAAGTTTGAAAAACTGTTCTAGTATTGAAAGAATCACAATCCAGATGAACCAAATAGAAGGAGATATATCACAAGATTTTGGTGTATATCCGAAATTGCGATATCTTGATTTGAGTGACAATAAATTTCATGGACACATTTCAACAAACTGGGAAAAGAGTCTTGATCTTGATACTTTCCAGGTATCTAACAATAATATTTCTGGTGTTATACCATTAGAACTTATTGGTTTAACCAAGCTCGGTAGGCTTCATCTTTCTTCAAATCAACTGACTGGGAAACTTCCAAAGGAATTAGGAAACAGGAAATCATTGGTTGAACTAAAGCTTAGTAACAATCATTTCACAGATAAGATTCCAACAGAAATTGGATCGCTGCAAAGTCTCGAAGAGTTGGATCTCGGCGGAAATGAGTTGAGTGGCACAATACCGGAAGAAGTTGCGAGGCTGTCCAGCTTACGGACGTTGAATTTGAGTAGAAACAAACTTGAAGGAAGTATTCCAGATCAGTTTGGTTCATCTCTTGGGTCTCTTGATCTTAGTGGCAATTTTTTTAGTGGAAAAATACCAACAGCTCTTGGAGGTTTGGTGCAGTTGTCAATGTTGAATCTCTCACATAATATGCTTTCAGGAACCATTCCTCAAAGTTTTGAAAGGAGTTTGGATTTTGTTAACATATCAGACAACCAGTTAGAAGGCCCTCTTCCGAAAATTCCAGCTTTTCTTAGTGCTTCATTTGAATCATTAAAAAATAACAAAGACTTATGTGGAAATATCACAGGATTGGATCCTTGTCCAACAAGCCGTAGTCGAAAGAGCAAACATGTCCTTCGGTCAGTATTGATTGCTCTAGGAGCTCTAATATTAGTGGTGTGCAGTGTCGGAATTTCAATGTATATTTTGTTTCGAAGGAAACCAGCAAAGGAAGAAAGCCAAACTCCAGAAGAAACACAAAGGGGAGTATTATTTTCAATTTGGAGTCATGATGGAAAAATGATGTTTGAAAATATCATTGACGCAACTGAGAATTTTGATGACAAACATCTCATTGGTGTTGGGAGTCAAGGAAATGTTTACAAGGCAGAGTTGTCTTCAGATTTGGTTGTTGCTGTGAAGAAGCTTCATTCAGTAACAGATGAAACAAAGTCGTATTTCAGTTCAAAGTCTTTTATGAGTGAGATTGAAACCTTGACAGGAATCAAACACCGAAACATCATAAAGCTTCATGGATTTTGCTCACATTCTAAGTTCTCGTTTTTGGTTTACAAGTTCATGGAAGGGGGAAGCTTAGATCAAATGCTAAACAATGATACACAAGCCACTGCATTTGATTGGGAAAAGAGGGTGAATTTTGTTAAAGGTGTCGCCAATGCTTTGTCCTACTTGCATCATGATTGCTTGCCTCCGATTATTCATCGCGACATATCAAGCAAGAATGTTCTTCTTAATCTTGACTATGAAGCTCATGTTTCCGACTTCGGGACGGCTAAGTTTCTAAAGCCTGGTTTACCTAGTTATACCCATTTTGCAGGCACTTTTGGGTATGCAGCTCCAGAGTTGGCACAAACAATGGAAGTGAATGAGAAATGTGATGTATATAGCTTTGGAGTTCTTGCATTGGAAATCATAATGGGAAAACATCCAGGAGATCTCATTTCATTATTTTTGTCACCATCTACAAGATCAATAGCTAATAATATGTTGTTGATAGATGTTTTAGATCAAAGACCTGAACAAATTAAGAAACCAATTGATGAAGAAGTGATCTTGATTGCAAAGTTAGCATTGGCTGGCTTGAGTCAAAATCCACGTTCTAGACCAACCATGGATCAAGTATCTAAGATGCTTGCAATAGGAAAAACACCTTTGGGGAACCAACTTCACATGATTAGACTAGGACAACTACAATCACTCTGA 3204 0.3655 MLPPTFIMILFIILFVLSTLSLPQSIAEATETESQALLKWKHTFDNQTQTLLSTWKNTTNPCTWRGIQCHKSNSVSTINLENFGLKGTLHSLTFSSLPNLTILNIYGNQFYGTIPPQIGNMSKIITLNFSQNSIDGSIPQELFTLKSLQNVDFSFCKLSGGISSSIANLTNLLYLDLGHNDFSGGFIPPEIGKLNKLWFLSIPESKLIGSIPQQIGLLTNLTYIDLSLNSLSGVIPETIGNLSKLNILVLSNNTKLSGPIPQSLWNLSSLNVIYFDKMNLSGSISDSIQNLVNLNQLALDLNRLSGSIPSTIGKLKNLVTLYLSTNHLTGSIPESIGNLINLQILSLQENNLTGTIPESIGNLKWLTTFEVATNKLHGRIPDGLYNITNWYSFVVSGNAFVGHLPSRICSGGKLRYLNADSNRFTGPVPTSLKNCSSIERITIQMNQIEGDISQDFGVYPKLRYLDLSDNKFHGHISTNWEKSLDLDTFQVSNNNISGVIPLELIGLTKLGRLHLSSNQLTGKLPKELGNRKSLVELKLSNNHFTDKIPTEIGSLQSLEELDLGGNELSGTIPEEVARLSSLRTLNLSRNKLEGSIPDQFGSSLGSLDLSGNFFSGKIPTALGGLVQLSMLNLSHNMLSGTIPQSFERSLDFVNISDNQLEGPLPKIPAFLSASFESLKNNKDLCGNITGLDPCPTSRSRKSKHVLRSVLIALGALILVVCSVGISMYILFRRKPAKEESQTPEETQRGVLFSIWSHDGKMMFENIIDATENFDDKHLIGVGSQGNVYKAELSSDLVVAVKKLHSVTDETKSYFSSKSFMSEIETLTGIKHRNIIKLHGFCSHSKFSFLVYKFMEGGSLDQMLNNDTQATAFDWEKRVNFVKGVANALSYLHHDCLPPIIHRDISSKNVLLNLDYEAHVSDFGTAKFLKPGLPSYTHFAGTFGYAAPELAQTMEVNEKCDVYSFGVLALEIIMGKHPGDLISLFLSPSTRSIANNMLLIDVLDQRPEQIKKPIDEEVILIAKLALAGLSQNPRSRPTMDQVSKMLAIGKTPLGNQLHMIRLGQLQSL 1067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03086 1067 SUPERFAMILY RNI-like 356 667 - -
Vivi6g03086 1067 Pfam Leucine rich repeat 219 274 IPR001611 GO:0005515
Vivi6g03086 1067 Pfam Leucine rich repeat 533 592 IPR001611 GO:0005515
Vivi6g03086 1067 FunFam MDIS1-interacting receptor like kinase 2 854 1051 - -
Vivi6g03086 1067 Gene3D Ribonuclease Inhibitor 185 277 IPR032675 -
Vivi6g03086 1067 ProSitePatterns Tyrosine protein kinases specific active-site signature. 899 911 IPR008266 GO:0004672|GO:0006468
Vivi6g03086 1067 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 186 409 - -
Vivi6g03086 1067 Gene3D Ribonuclease Inhibitor 278 389 IPR032675 -
Vivi6g03086 1067 SMART LRR_sd22_2 555 578 - -
Vivi6g03086 1067 SMART LRR_sd22_2 218 244 - -
Vivi6g03086 1067 SMART LRR_sd22_2 315 341 - -
Vivi6g03086 1067 FunFam Nuclear pore complex protein NUP107 30 185 - -
Vivi6g03086 1067 Gene3D Phosphorylase Kinase; domain 1 735 853 - -
Vivi6g03086 1067 Pfam Leucine rich repeat N-terminal domain 32 69 IPR013210 -
Vivi6g03086 1067 Gene3D Ribonuclease Inhibitor 29 184 IPR032675 -
Vivi6g03086 1067 Gene3D Transferase(Phosphotransferase) domain 1 854 1052 - -
Vivi6g03086 1067 Pfam Protein kinase domain 774 1042 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g03086 1067 SMART LRR_typ_2 315 338 IPR003591 -
Vivi6g03086 1067 SMART LRR_typ_2 97 121 IPR003591 -
Vivi6g03086 1067 SMART LRR_typ_2 169 194 IPR003591 -
Vivi6g03086 1067 SMART LRR_typ_2 339 363 IPR003591 -
Vivi6g03086 1067 SMART LRR_typ_2 625 648 IPR003591 -
Vivi6g03086 1067 SMART LRR_typ_2 218 241 IPR003591 -
Vivi6g03086 1067 SMART LRR_typ_2 555 578 IPR003591 -
Vivi6g03086 1067 SMART LRR_typ_2 579 603 IPR003591 -
Vivi6g03086 1067 SMART LRR_typ_2 507 531 IPR003591 -
Vivi6g03086 1067 PANTHER LEUCINE RICH REPEAT KINASE 2 337 1048 - -
Vivi6g03086 1067 Gene3D Ribonuclease Inhibitor 413 703 IPR032675 -
Vivi6g03086 1067 SUPERFAMILY RNI-like 78 398 - -
Vivi6g03086 1067 ProSiteProfiles Protein kinase domain profile. 773 1047 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g03086 1067 PRINTS Leucine-rich repeat signature 221 234 - -
Vivi6g03086 1067 PRINTS Leucine-rich repeat signature 579 592 - -
Vivi6g03086 1067 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 410 698 - -
Vivi6g03086 1067 FunFam Leucine-rich repeat receptor protein kinase MSP1 736 853 - -
Vivi6g03086 1067 SUPERFAMILY Protein kinase-like (PK-like) 755 1045 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03086 Vivi-Chr6 118766946 118770446 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03086 4 947 Receptor kinase-like Gene Family AT4G08850 44.121 0.0 709
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vivi6g03086 Pkinase 5.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03086 - - gmx:100814634 1300.8