LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi6g03081	ATGTTCTTCCTCCATTCTCTTCACCAACCCCAAACTCCTTATCCTCACTCCCATTCACCAAACCCTCTCACCCCTAACCGTGACCCTAACAGAAACGGTTACATCAAGTTCCGAACAACTCACCGTGACAATCTCCGTTACCTAAAATCCCTAACCATAATCCACCCCAACACCAAACCCAACAACCTCCCCCACCCCGACGCCGTCCACCACATCCTCGCCACCGTCACCTTCCTCAAATCACATTCCTTCTCCGACGAAGACATCCCCCGTCTCGTCCACCACTCTCCCAAACTCTTCTCCACCTCCTTCAACCCCACAGACCTCTCCCCCGTCTTCACCTTCCTCTCCAACGACCTTCTCGCCACCGCGGAAGAATCCCGCGGCCTCATCCTCCGTTGTCCCAACCTCCTCTTCACCGATCCCAACCACTTTCTCAAACCAACACTCCACTTCCTAAACGAAATCGGAATCCGCGGATTAAACCGGCCGACGAACCGGAACGCGCATCTGTTGAACACGCGCGTGGAGAAGCTGCGGCTGAGAGTGCAATTCATGGAGGAGGTGGTGGGGTTTACTCACGACGAAGCGGTTAACGCGTGTGCGAGGCTGCCGGCGATATTGGGATATGATTTGGAGAATAATTTGTGGCCGAAGTTTGTGTATTTGGTGAAAGAGATGGAGAGGGATTTGGAGGAGTTGAAAAAGTTTCCTCAGTATTTTGGGTTTAGTTTGGAGAAGAGGATTGTTCCGAGGCATTTGCATTTGAAGGAAAGAGGTGTTAGGATTCCTTTGAATAGAATGTTGATGTGGGGGGATGAAAAATTTTATGCCAAGTGGAAGTGA	846	0.5106	MFFLHSLHQPQTPYPHSHSPNPLTPNRDPNRNGYIKFRTTHRDNLRYLKSLTIIHPNTKPNNLPHPDAVHHILATVTFLKSHSFSDEDIPRLVHHSPKLFSTSFNPTDLSPVFTFLSNDLLATAEESRGLILRCPNLLFTDPNHFLKPTLHFLNEIGIRGLNRPTNRNAHLLNTRVEKLRLRVQFMEEVVGFTHDEAVNACARLPAILGYDLENNLWPKFVYLVKEMERDLEELKKFPQYFGFSLEKRIVPRHLHLKERGVRIPLNRMLMWGDEKFYAKWK	281

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi6g03081	281	SMART	mt_12	231	262	IPR003690	GO:0003690\|GO:0006355
	Vivi6g03081	281	SMART	mt_12	162	193	IPR003690	GO:0003690\|GO:0006355
	Vivi6g03081	281	SMART	mt_12	128	159	IPR003690	GO:0003690\|GO:0006355
	Vivi6g03081	281	SMART	mt_12	198	230	IPR003690	GO:0003690\|GO:0006355
	Vivi6g03081	281	SMART	mt_12	90	123	IPR003690	GO:0003690\|GO:0006355
	Vivi6g03081	281	MobiDBLite	consensus disorder prediction	1	31	-	-
	Vivi6g03081	281	Gene3D	Transcription termination factor 3, mitochondrial	47	281	IPR038538	-
	Vivi6g03081	281	Pfam	mTERF	125	276	IPR003690	GO:0003690\|GO:0006355
	Vivi6g03081	281	Pfam	mTERF	65	158	IPR003690	GO:0003690\|GO:0006355
	Vivi6g03081	281	PANTHER	CGI-12 PROTEIN-RELATED	69	279	IPR003690	GO:0003690\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi6g03081	Vivi-Chr6	118618230	118619258	Dispersed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	mTERF	Vivi6g03081		mTERF	4.9e-28	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi6g03081	K15031		-	gmx:100812333	385.956