Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03075 ATGCCTCCGAAAGTGGTGAAAAGAGGTGCTGCGGCGAAGAAAGCGAATCTTTCTTCAAAAACTGCAATTCAGAATCAGAAGCAAGAGCCTGAACCTGAACCCGTGAATAATCATGAAGAAAATCATGTTGCTGATGTTGCGGCCGAAGAGAACCCCGTTGAGACAGTGCCTAATGGTTTGGCTGCGGTGGAAACAGACAATGGGGAGGAGGTTAAGGACTCCATAGATGAATATGAAAAAGATGAACACTTAGATTTGGAGGATAATTATCATGAGTCTGATCCTGACGAGTATGTTGGTGATGACTATGATGAGAGGGAAAATGAACAAGACGATGGTCAGGAGGGTGTAGATGAAGTGGAGGAAGAACTTGAAGAGATTATGGATGAAGAACTTGAAGAAATTGTGGATGAAGAAGATGGTGATACTGGCGAAGAAGTTGAGTATGTTTATGAAGAAGTTGAGGATGATGATGATGATGAGGATGCTGCTGCTGCTGCTGGCAATGATGATGATCATGCCGGTATGAAGAACGAGCACGAGCATCTGGCTGTTGGGGAGAAAGAGGAGCAAGGTGAAGTTAGAAAGGAAAGACAGAAGCCGAAGGAATTTGAAGTATTTGTTGGGGGCCTAGACAAGAATGCAACGGAGGATGATCTAAGGAAGATTTTCGGTAAAGTTGGGGAGATTACTAAAGCCAGGCTAATGAAGAATCCTCAGACTAAAAGGAACAAGGGGTTTGCATTATTGCGTTTCAAAACTGTTGGACAAGTGAAAAGAGCACTGGCAGAGCTGAAAAATCCAGTGATTAATGGCAAACAATGCGGTATCACTCCATGTCAGGACAGTAATACTCTCTATTTAGATAACATTTGCAAGACATGGAAAAAGGAAGCTTTAAAGGAGAAATTGAAACATTATGAAATTGAAAGTTTCAAGGATTTGACTTTAGTAGAAGATGGTAACGATGAGGGAACAAACTGTGGATTTGCGCTTTTGGAATTTTCATCACGTTCAGATGCTAAGGAAGCCTATAAGCGATTGCAAAAGAAAGATGTTGTTTTTGGAGTTGATAAGCCTGCTGAGGTTTCCTTTGCAGACTCCTTTGATGACCCGGAGGATGATATTATGGCACAGGTTAAAACTGTATTTATTGATTTACTGCCTTCTTCATGGGATGAAGATTATGTCCGAAGTCTTCTTAAGAAATATGGGGAGGTTGAAAAAGTTGAGCTTGCTAAGAACAGGCCAACTGCTCGCAGGAAGAATTATGGATTTGTTACGTTTGCCACGCATGCTGCTGCTGTGGAATGTGCTGAGAGCATTACCGGTGCAGGGTTAGGCGAAGGCAACAAAAAGGCAAAAGTCAGGGCTAGGTTGTTCAGACCTCTTCCGAAAGTACGTGGTAAACATGTTACTCGTAGTGACTTCTCTGGCCGCAAGCTTGGAAGGTCGGCAAGGCCTTCACGGAGTCGACCTTCACTGCAGAGTCGATTTGCACTACGGAGTCGACTTGGACCACCGATTCGACCTACACTACAGAGTCGACTTGGACCACCTAGTCGATCTGCTCGTGTTGAGAGAAGACTTGGAAATAGTATTCCATCAGTTAGACCTTCTAGTTCGAGAAATAGACGTCCTGTCACAGCAGTGCCAGTAAGAGCTAGGCCAGCCACTCCTCCAGCTAGATCCTATGAGAGGAGATTGACTGCTGCTTATCCAAAAGGTAGCATGAAGAGAGATTATGCTCGACCTGTGGATCTACCACCTCCAAGAAGTAGAGTTTCTGCAGATTATGGCTCTCAGGTGGCCTCTCAAAGACGTTCATCTTATAGAGATTATCCAGCCCGTGACTCTGGCTACTCTGATCTGCATAGGAGCGCGTCTCGTACTGCACCAAGGAGGAGTCATCTAGATGACAGCTTTGATCAAAGACTTGAAAGGCCTCCTCCTCTTCCTCCTTCCCATCTAAGTTATCGTGAAGGGCGCCCTCGTGATTATGACACACTATCTGGCTCAAAGCGTCCTTATGCTACCATAGATGATATTCCTCCACGGTATGCTGATGTTGATGCTCGCCAATCAAGATCTCGATTAAACTATGATTATGGAGGCAGTGTTTCAGAATATAGAGAGACTTATGGTGATAGGCTTGGAAGATCTAGTTTGGGATATAATAGTAGCAGTAGAAGTTCTACATCTATTCAAAACTCACATGGGGCGTATAGCAGTCGACAGGACATGAGTTATGGAAGAGGTTCTATTGGTGGTAGTGATGGGGGTATCTACTCATCAAGTTATGGTGGGGATTACATATCTCGTGGAAGTGATGCTGGTGGCAGCTCGTATTCGTCCATGTATTCTAGCAGAGGTATGAACGGTAGTAGCAGTTACATGGGTGGCGGCGGATCTAGGTCTTATTATTGA 2427 0.4438 MPPKVVKRGAAAKKANLSSKTAIQNQKQEPEPEPVNNHEENHVADVAAEENPVETVPNGLAAVETDNGEEVKDSIDEYEKDEHLDLEDNYHESDPDEYVGDDYDERENEQDDGQEGVDEVEEELEEIMDEELEEIVDEEDGDTGEEVEYVYEEVEDDDDDEDAAAAAGNDDDHAGMKNEHEHLAVGEKEEQGEVRKERQKPKEFEVFVGGLDKNATEDDLRKIFGKVGEITKARLMKNPQTKRNKGFALLRFKTVGQVKRALAELKNPVINGKQCGITPCQDSNTLYLDNICKTWKKEALKEKLKHYEIESFKDLTLVEDGNDEGTNCGFALLEFSSRSDAKEAYKRLQKKDVVFGVDKPAEVSFADSFDDPEDDIMAQVKTVFIDLLPSSWDEDYVRSLLKKYGEVEKVELAKNRPTARRKNYGFVTFATHAAAVECAESITGAGLGEGNKKAKVRARLFRPLPKVRGKHVTRSDFSGRKLGRSARPSRSRPSLQSRFALRSRLGPPIRPTLQSRLGPPSRSARVERRLGNSIPSVRPSSSRNRRPVTAVPVRARPATPPARSYERRLTAAYPKGSMKRDYARPVDLPPPRSRVSADYGSQVASQRRSSYRDYPARDSGYSDLHRSASRTAPRRSHLDDSFDQRLERPPPLPPSHLSYREGRPRDYDTLSGSKRPYATIDDIPPRYADVDARQSRSRLNYDYGGSVSEYRETYGDRLGRSSLGYNSSSRSSTSIQNSHGAYSSRQDMSYGRGSIGGSDGGIYSSSYGGDYISRGSDAGGSSYSSMYSSRGMNGSSSYMGGGGSRSYY 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03075 808 MobiDBLite consensus disorder prediction 777 808 - -
Vivi6g03075 808 MobiDBLite consensus disorder prediction 17 31 - -
Vivi6g03075 808 MobiDBLite consensus disorder prediction 469 691 - -
Vivi6g03075 808 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 381 457 IPR000504 GO:0003723
Vivi6g03075 808 MobiDBLite consensus disorder prediction 32 47 - -
Vivi6g03075 808 Gene3D - 142 278 IPR012677 -
Vivi6g03075 808 CDD RRM_SF 383 457 - -
Vivi6g03075 808 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 284 368 IPR000504 GO:0003723
Vivi6g03075 808 FunFam Heterogeneous nuclear ribonucleoprotein Q 284 367 - -
Vivi6g03075 808 MobiDBLite consensus disorder prediction 1 122 - -
Vivi6g03075 808 MobiDBLite consensus disorder prediction 721 751 - -
Vivi6g03075 808 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 30 803 - -
Vivi6g03075 808 MobiDBLite consensus disorder prediction 611 646 - -
Vivi6g03075 808 SUPERFAMILY RNA-binding domain, RBD 375 456 IPR035979 GO:0003676
Vivi6g03075 808 MobiDBLite consensus disorder prediction 774 808 - -
Vivi6g03075 808 MobiDBLite consensus disorder prediction 66 90 - -
Vivi6g03075 808 SMART rrm1_1 382 457 IPR000504 GO:0003723
Vivi6g03075 808 SMART rrm1_1 205 278 IPR000504 GO:0003723
Vivi6g03075 808 SMART rrm1_1 285 364 IPR000504 GO:0003723
Vivi6g03075 808 Coils Coil 110 141 - -
Vivi6g03075 808 Gene3D - 370 498 IPR012677 -
Vivi6g03075 808 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 204 282 IPR000504 GO:0003723
Vivi6g03075 808 MobiDBLite consensus disorder prediction 91 122 - -
Vivi6g03075 808 MobiDBLite consensus disorder prediction 721 753 - -
Vivi6g03075 808 MobiDBLite consensus disorder prediction 469 483 - -
Vivi6g03075 808 MobiDBLite consensus disorder prediction 153 177 - -
Vivi6g03075 808 SUPERFAMILY RNA-binding domain, RBD 204 350 IPR035979 GO:0003676
Vivi6g03075 808 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 383 445 IPR000504 GO:0003723
Vivi6g03075 808 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 286 352 IPR000504 GO:0003723
Vivi6g03075 808 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 206 274 IPR000504 GO:0003723
Vivi6g03075 808 Gene3D - 283 367 IPR012677 -
Vivi6g03075 808 CDD RRM_SF 206 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03075 Vivi-Chr6 118581488 118587020 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03075 206 542 Eukaryotic Initiation Factors Gene Family AT1G49760 22.071 3.48e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03075 - - gmx:100811387 803.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g03361 7 99224972 99230093 Vivi6g03075 6 118581488 118587020 PCT