Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vivi6g03075 | ATGCCTCCGAAAGTGGTGAAAAGAGGTGCTGCGGCGAAGAAAGCGAATCTTTCTTCAAAAACTGCAATTCAGAATCAGAAGCAAGAGCCTGAACCTGAACCCGTGAATAATCATGAAGAAAATCATGTTGCTGATGTTGCGGCCGAAGAGAACCCCGTTGAGACAGTGCCTAATGGTTTGGCTGCGGTGGAAACAGACAATGGGGAGGAGGTTAAGGACTCCATAGATGAATATGAAAAAGATGAACACTTAGATTTGGAGGATAATTATCATGAGTCTGATCCTGACGAGTATGTTGGTGATGACTATGATGAGAGGGAAAATGAACAAGACGATGGTCAGGAGGGTGTAGATGAAGTGGAGGAAGAACTTGAAGAGATTATGGATGAAGAACTTGAAGAAATTGTGGATGAAGAAGATGGTGATACTGGCGAAGAAGTTGAGTATGTTTATGAAGAAGTTGAGGATGATGATGATGATGAGGATGCTGCTGCTGCTGCTGGCAATGATGATGATCATGCCGGTATGAAGAACGAGCACGAGCATCTGGCTGTTGGGGAGAAAGAGGAGCAAGGTGAAGTTAGAAAGGAAAGACAGAAGCCGAAGGAATTTGAAGTATTTGTTGGGGGCCTAGACAAGAATGCAACGGAGGATGATCTAAGGAAGATTTTCGGTAAAGTTGGGGAGATTACTAAAGCCAGGCTAATGAAGAATCCTCAGACTAAAAGGAACAAGGGGTTTGCATTATTGCGTTTCAAAACTGTTGGACAAGTGAAAAGAGCACTGGCAGAGCTGAAAAATCCAGTGATTAATGGCAAACAATGCGGTATCACTCCATGTCAGGACAGTAATACTCTCTATTTAGATAACATTTGCAAGACATGGAAAAAGGAAGCTTTAAAGGAGAAATTGAAACATTATGAAATTGAAAGTTTCAAGGATTTGACTTTAGTAGAAGATGGTAACGATGAGGGAACAAACTGTGGATTTGCGCTTTTGGAATTTTCATCACGTTCAGATGCTAAGGAAGCCTATAAGCGATTGCAAAAGAAAGATGTTGTTTTTGGAGTTGATAAGCCTGCTGAGGTTTCCTTTGCAGACTCCTTTGATGACCCGGAGGATGATATTATGGCACAGGTTAAAACTGTATTTATTGATTTACTGCCTTCTTCATGGGATGAAGATTATGTCCGAAGTCTTCTTAAGAAATATGGGGAGGTTGAAAAAGTTGAGCTTGCTAAGAACAGGCCAACTGCTCGCAGGAAGAATTATGGATTTGTTACGTTTGCCACGCATGCTGCTGCTGTGGAATGTGCTGAGAGCATTACCGGTGCAGGGTTAGGCGAAGGCAACAAAAAGGCAAAAGTCAGGGCTAGGTTGTTCAGACCTCTTCCGAAAGTACGTGGTAAACATGTTACTCGTAGTGACTTCTCTGGCCGCAAGCTTGGAAGGTCGGCAAGGCCTTCACGGAGTCGACCTTCACTGCAGAGTCGATTTGCACTACGGAGTCGACTTGGACCACCGATTCGACCTACACTACAGAGTCGACTTGGACCACCTAGTCGATCTGCTCGTGTTGAGAGAAGACTTGGAAATAGTATTCCATCAGTTAGACCTTCTAGTTCGAGAAATAGACGTCCTGTCACAGCAGTGCCAGTAAGAGCTAGGCCAGCCACTCCTCCAGCTAGATCCTATGAGAGGAGATTGACTGCTGCTTATCCAAAAGGTAGCATGAAGAGAGATTATGCTCGACCTGTGGATCTACCACCTCCAAGAAGTAGAGTTTCTGCAGATTATGGCTCTCAGGTGGCCTCTCAAAGACGTTCATCTTATAGAGATTATCCAGCCCGTGACTCTGGCTACTCTGATCTGCATAGGAGCGCGTCTCGTACTGCACCAAGGAGGAGTCATCTAGATGACAGCTTTGATCAAAGACTTGAAAGGCCTCCTCCTCTTCCTCCTTCCCATCTAAGTTATCGTGAAGGGCGCCCTCGTGATTATGACACACTATCTGGCTCAAAGCGTCCTTATGCTACCATAGATGATATTCCTCCACGGTATGCTGATGTTGATGCTCGCCAATCAAGATCTCGATTAAACTATGATTATGGAGGCAGTGTTTCAGAATATAGAGAGACTTATGGTGATAGGCTTGGAAGATCTAGTTTGGGATATAATAGTAGCAGTAGAAGTTCTACATCTATTCAAAACTCACATGGGGCGTATAGCAGTCGACAGGACATGAGTTATGGAAGAGGTTCTATTGGTGGTAGTGATGGGGGTATCTACTCATCAAGTTATGGTGGGGATTACATATCTCGTGGAAGTGATGCTGGTGGCAGCTCGTATTCGTCCATGTATTCTAGCAGAGGTATGAACGGTAGTAGCAGTTACATGGGTGGCGGCGGATCTAGGTCTTATTATTGA | 2427 | 0.4438 | MPPKVVKRGAAAKKANLSSKTAIQNQKQEPEPEPVNNHEENHVADVAAEENPVETVPNGLAAVETDNGEEVKDSIDEYEKDEHLDLEDNYHESDPDEYVGDDYDERENEQDDGQEGVDEVEEELEEIMDEELEEIVDEEDGDTGEEVEYVYEEVEDDDDDEDAAAAAGNDDDHAGMKNEHEHLAVGEKEEQGEVRKERQKPKEFEVFVGGLDKNATEDDLRKIFGKVGEITKARLMKNPQTKRNKGFALLRFKTVGQVKRALAELKNPVINGKQCGITPCQDSNTLYLDNICKTWKKEALKEKLKHYEIESFKDLTLVEDGNDEGTNCGFALLEFSSRSDAKEAYKRLQKKDVVFGVDKPAEVSFADSFDDPEDDIMAQVKTVFIDLLPSSWDEDYVRSLLKKYGEVEKVELAKNRPTARRKNYGFVTFATHAAAVECAESITGAGLGEGNKKAKVRARLFRPLPKVRGKHVTRSDFSGRKLGRSARPSRSRPSLQSRFALRSRLGPPIRPTLQSRLGPPSRSARVERRLGNSIPSVRPSSSRNRRPVTAVPVRARPATPPARSYERRLTAAYPKGSMKRDYARPVDLPPPRSRVSADYGSQVASQRRSSYRDYPARDSGYSDLHRSASRTAPRRSHLDDSFDQRLERPPPLPPSHLSYREGRPRDYDTLSGSKRPYATIDDIPPRYADVDARQSRSRLNYDYGGSVSEYRETYGDRLGRSSLGYNSSSRSSTSIQNSHGAYSSRQDMSYGRGSIGGSDGGIYSSSYGGDYISRGSDAGGSSYSSMYSSRGMNGSSSYMGGGGSRSYY | 808 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vivi6g03075 | 808 | MobiDBLite | consensus disorder prediction | 777 | 808 | - | - | |
Vivi6g03075 | 808 | MobiDBLite | consensus disorder prediction | 17 | 31 | - | - | |
Vivi6g03075 | 808 | MobiDBLite | consensus disorder prediction | 469 | 691 | - | - | |
Vivi6g03075 | 808 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 381 | 457 | IPR000504 | GO:0003723 | |
Vivi6g03075 | 808 | MobiDBLite | consensus disorder prediction | 32 | 47 | - | - | |
Vivi6g03075 | 808 | Gene3D | - | 142 | 278 | IPR012677 | - | |
Vivi6g03075 | 808 | CDD | RRM_SF | 383 | 457 | - | - | |
Vivi6g03075 | 808 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 284 | 368 | IPR000504 | GO:0003723 | |
Vivi6g03075 | 808 | FunFam | Heterogeneous nuclear ribonucleoprotein Q | 284 | 367 | - | - | |
Vivi6g03075 | 808 | MobiDBLite | consensus disorder prediction | 1 | 122 | - | - | |
Vivi6g03075 | 808 | MobiDBLite | consensus disorder prediction | 721 | 751 | - | - | |
Vivi6g03075 | 808 | PANTHER | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN | 30 | 803 | - | - | |
Vivi6g03075 | 808 | MobiDBLite | consensus disorder prediction | 611 | 646 | - | - | |
Vivi6g03075 | 808 | SUPERFAMILY | RNA-binding domain, RBD | 375 | 456 | IPR035979 | GO:0003676 | |
Vivi6g03075 | 808 | MobiDBLite | consensus disorder prediction | 774 | 808 | - | - | |
Vivi6g03075 | 808 | MobiDBLite | consensus disorder prediction | 66 | 90 | - | - | |
Vivi6g03075 | 808 | SMART | rrm1_1 | 382 | 457 | IPR000504 | GO:0003723 | |
Vivi6g03075 | 808 | SMART | rrm1_1 | 205 | 278 | IPR000504 | GO:0003723 | |
Vivi6g03075 | 808 | SMART | rrm1_1 | 285 | 364 | IPR000504 | GO:0003723 | |
Vivi6g03075 | 808 | Coils | Coil | 110 | 141 | - | - | |
Vivi6g03075 | 808 | Gene3D | - | 370 | 498 | IPR012677 | - | |
Vivi6g03075 | 808 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 204 | 282 | IPR000504 | GO:0003723 | |
Vivi6g03075 | 808 | MobiDBLite | consensus disorder prediction | 91 | 122 | - | - | |
Vivi6g03075 | 808 | MobiDBLite | consensus disorder prediction | 721 | 753 | - | - | |
Vivi6g03075 | 808 | MobiDBLite | consensus disorder prediction | 469 | 483 | - | - | |
Vivi6g03075 | 808 | MobiDBLite | consensus disorder prediction | 153 | 177 | - | - | |
Vivi6g03075 | 808 | SUPERFAMILY | RNA-binding domain, RBD | 204 | 350 | IPR035979 | GO:0003676 | |
Vivi6g03075 | 808 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 383 | 445 | IPR000504 | GO:0003723 | |
Vivi6g03075 | 808 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 286 | 352 | IPR000504 | GO:0003723 | |
Vivi6g03075 | 808 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 206 | 274 | IPR000504 | GO:0003723 | |
Vivi6g03075 | 808 | Gene3D | - | 283 | 367 | IPR012677 | - | |
Vivi6g03075 | 808 | CDD | RRM_SF | 206 | 275 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vivi6g03075 | Vivi-Chr6 | 118581488 | 118587020 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vivi6g03075 | 206 | 542 | Eukaryotic Initiation Factors Gene Family | AT1G49760 | 22.071 | 3.48e-10 | 61.6 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vivi6g03075 | - | - | gmx:100811387 | 803.512 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vivi7g03361 | 7 | 99224972 | 99230093 | Vivi6g03075 | 6 | 118581488 | 118587020 | PCT |