Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03074 ATGCCTCCGAAAGTGGTGAAAAGAGGTGCTGCGGCGAAGAAAGCGAATCTTTCTTCAAAAACTGCAATTCAGAATCAGAAGCAAGAGCCTGAACCTGAACCCGTGAATAATCATGAAGAAAATCATGTTGCTGATGTTGCGGCCGAAGAGAACCCCGTTGAGACAGTGCCTAATGGTTTGGCTGCGGTGGAAAACAATGGGGAGGAGGTTAAGGACTCCATAGATGAATATGAAAAAGATGAACACTTAGATTTGGAGGATAATTATCATGAGTCTGATCCTGACGAGTATGTTGGTGATGACTATGATGAGAGGGAAAATGAACAAGACGATGGTCAGGAGGGTGTAGATGAAGTGGAGGAAGAACTTGAAGAGATTATGGATGAAGAACTTGAAGAAATTGTGGATGAAGAAGATGGTGATACTGGCGAAGAAGTTGAGTATGTTTATGAAGAAGTTGAGGATGATGATGATGATGAGGATGCTGCTGCTGCTGCTGGCAATGATGATGATCATGCCGGTATGAAGAACGAGCACGAGCATCTGGCTGTTGGGGAGAAAGAGGAGCAAGGTGAAGTTAGAAAGGAAAGACAGAAGCCGAAGGAATTTGAAGTATTTGTTGGGGGCCTAGACAAGAATGCAACGGAGGATGATCTAAGGAAGATTTTCGGTAAAGTTGGGGAGATTACTAAAGCCAGGCTAATGAAGAATCCTCAGACTAAAAGGAACAAGGGGTTTGCATTATTGCGTTTCAAAACTGTTGGACAAGTGAAAAGAGCACTGGCAGAGCTGAAAAATCCAGTGATTAATGGCAAACAATGCGGTATCACTCCATGTCAGGACAGTAATACTCTCTATTTAGATAACATTTGCAAGACATGGAAAAAGGAAGCTTTAAAGGAGAAATTGAAACATTATGAAATTGAAAGTTTCAAGGATTTGACTTTAGTAGAAGATGGTAACGATGAGGGAACAAACTGTGGATTTGCGCTTTTGGAATTTTCATCACGTTCAGATGCTAAGGAAGCCTATAAGCGATTGCAAAAGAAAGATGTTGTTTTTGGAGTTGATAAGCCTGCTGAGGTTTCCTTTGCAGACTCCTTTGATGACCCGGAGGATGATATTATGGCACAGGTTAAAACTGTATTTATTGATTTACTGCCTTCTTCATGGGATGAAGATTATGTCCGAAGTCTTCTTAAGAAATATGGGGAGGTTGAAAAAGTTGAGCTTGCTAAGAACAGGCCAACTGCTCGCAGGAAGAATTATGGATTTGTTACGTTTGCCACGCATGCTGCTGCTGTGGAATGTGCTGAGAGCATTACCGGTGCAGGGTTAGGCGAAGGCAACAAAAAGGCAAAAGTCAGGGCTAGGTTGTTCAGACCTCTTCCGAAAGTACGTGGTAAACATGTTACTCGTAGTGACTTCTCTGGCCGCAAGCTTGGAAGGTCGGCAAGGCCTTCACGGAGTCGACCTTCACTGCAGAGTCGATTTGCACTACGGAGTCGACTTGGACCACCGATTCGACCTACACTACAGAGTCGACTTGGACCACCTAGTCGATCTGCTCGTGTTGAGAGAAGACTTGGAAATAGTATTCCATCAGTTAGACCTTCTAGTTCGAGAAATAGACGTCCTGTCACAGCAGTGCCAGTAAGAGCTAGGCCAGCCACTCCTCCAGCTAGATCCTATGAGAGGAGATTGACTGCTGCTTATCCAAAAGGTAGCATGAAGAGAGATTATGCTCGACCTGTGGATCTACCACCTCCAAGAAGTAGAGTTTCTGCAGATTATGGCTCTCAGGTGGCCTCTCAAAGACGTTCATCTTATAGAGATTATCCAGCCCGTGACTCTGGCTACTCTGATCTGCATAGGAGCGCGTCTCGTACTGCACCAAGGAGGAGTCATCTAGATGACAGCTTTGATCAAAGACTTGAAAGGCCTCCTCCTCTTCCTCCTTCCCATCTAAGTTATCGTGAAGGGCGCCCTCGTGATTATGACACACTATCTGGCTCAAAGCGTCCTTATGCTACCATAGATGATATTCCTCCACGGTATGCTGATGTTGATGCTCGCCAATCAAGATCTCGATTAAACTATGATTATGGAGGCAGTGTTTCAGAATATAGAGAGACTTATGGTGATAGGCTTGGAAGATCTAGTTTGGGATATAATAGTAGCAGTAGAAGTTCTACATCTATTCAAAACTCACATGGGGCGTATAGCAGTCGACAGGACATGAGTTATGGAAGAGGTTCTATTGGTGGTAGTGATGGGGGTATCTACTCATCAAGTTATGGTGGGGATTACATATCTCGTGGAAGTGATGCTGGTGGCAGCTCGTATTCGTCCATGTATTCTAGCAGAGGTATGAACGGTAGTAGCAGTTACATGGGTGGCGGCGGATCTAGGTCTTATTATTGA 2424 0.4435 MPPKVVKRGAAAKKANLSSKTAIQNQKQEPEPEPVNNHEENHVADVAAEENPVETVPNGLAAVENNGEEVKDSIDEYEKDEHLDLEDNYHESDPDEYVGDDYDERENEQDDGQEGVDEVEEELEEIMDEELEEIVDEEDGDTGEEVEYVYEEVEDDDDDEDAAAAAGNDDDHAGMKNEHEHLAVGEKEEQGEVRKERQKPKEFEVFVGGLDKNATEDDLRKIFGKVGEITKARLMKNPQTKRNKGFALLRFKTVGQVKRALAELKNPVINGKQCGITPCQDSNTLYLDNICKTWKKEALKEKLKHYEIESFKDLTLVEDGNDEGTNCGFALLEFSSRSDAKEAYKRLQKKDVVFGVDKPAEVSFADSFDDPEDDIMAQVKTVFIDLLPSSWDEDYVRSLLKKYGEVEKVELAKNRPTARRKNYGFVTFATHAAAVECAESITGAGLGEGNKKAKVRARLFRPLPKVRGKHVTRSDFSGRKLGRSARPSRSRPSLQSRFALRSRLGPPIRPTLQSRLGPPSRSARVERRLGNSIPSVRPSSSRNRRPVTAVPVRARPATPPARSYERRLTAAYPKGSMKRDYARPVDLPPPRSRVSADYGSQVASQRRSSYRDYPARDSGYSDLHRSASRTAPRRSHLDDSFDQRLERPPPLPPSHLSYREGRPRDYDTLSGSKRPYATIDDIPPRYADVDARQSRSRLNYDYGGSVSEYRETYGDRLGRSSLGYNSSSRSSTSIQNSHGAYSSRQDMSYGRGSIGGSDGGIYSSSYGGDYISRGSDAGGSSYSSMYSSRGMNGSSSYMGGGGSRSYY 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03074 807 MobiDBLite consensus disorder prediction 17 31 - -
Vivi6g03074 807 FunFam Heterogeneous nuclear ribonucleoprotein Q 283 366 - -
Vivi6g03074 807 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 29 802 - -
Vivi6g03074 807 MobiDBLite consensus disorder prediction 610 645 - -
Vivi6g03074 807 MobiDBLite consensus disorder prediction 32 47 - -
Vivi6g03074 807 MobiDBLite consensus disorder prediction 720 752 - -
Vivi6g03074 807 CDD RRM_SF 205 274 - -
Vivi6g03074 807 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 380 456 IPR000504 GO:0003723
Vivi6g03074 807 MobiDBLite consensus disorder prediction 68 89 - -
Vivi6g03074 807 MobiDBLite consensus disorder prediction 776 807 - -
Vivi6g03074 807 SUPERFAMILY RNA-binding domain, RBD 374 455 IPR035979 GO:0003676
Vivi6g03074 807 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 283 367 IPR000504 GO:0003723
Vivi6g03074 807 SMART rrm1_1 284 363 IPR000504 GO:0003723
Vivi6g03074 807 SMART rrm1_1 381 456 IPR000504 GO:0003723
Vivi6g03074 807 SMART rrm1_1 204 277 IPR000504 GO:0003723
Vivi6g03074 807 MobiDBLite consensus disorder prediction 152 176 - -
Vivi6g03074 807 MobiDBLite consensus disorder prediction 90 119 - -
Vivi6g03074 807 Gene3D - 282 366 IPR012677 -
Vivi6g03074 807 MobiDBLite consensus disorder prediction 720 750 - -
Vivi6g03074 807 MobiDBLite consensus disorder prediction 468 482 - -
Vivi6g03074 807 Coils Coil 60 80 - -
Vivi6g03074 807 Coils Coil 109 140 - -
Vivi6g03074 807 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 285 351 IPR000504 GO:0003723
Vivi6g03074 807 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 382 444 IPR000504 GO:0003723
Vivi6g03074 807 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 205 273 IPR000504 GO:0003723
Vivi6g03074 807 Gene3D - 141 277 IPR012677 -
Vivi6g03074 807 CDD RRM_SF 382 456 - -
Vivi6g03074 807 Gene3D - 369 497 IPR012677 -
Vivi6g03074 807 MobiDBLite consensus disorder prediction 773 807 - -
Vivi6g03074 807 MobiDBLite consensus disorder prediction 1 119 - -
Vivi6g03074 807 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 203 281 IPR000504 GO:0003723
Vivi6g03074 807 SUPERFAMILY RNA-binding domain, RBD 203 349 IPR035979 GO:0003676
Vivi6g03074 807 MobiDBLite consensus disorder prediction 468 690 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03074 Vivi-Chr6 118581488 118587020 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03074 205 541 Eukaryotic Initiation Factors Gene Family AT1G49760 22.071 3.30e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03074 - - gmx:100811387 810.061