Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03072 ATGGCTGCTACTTCTTCACCCACCGATTCAAACCCTCCCTCCGCCGTTCCTCTCCCTCTTTCCCTACCTGCCCCACCACCACCTACCACCTCCCGTCGTCTTCCTCCTCCCTGCTGGACACCGGAGGAAACCTCTGCCCTAATCGACGCTTACCGTGACAAATGGTACTCTCTCGGCCGAACAAATCTCAAAGCCATCCACTGGCAGGAAGTCGCCGACGCTGTCACCGCTCGTTGCCCTAACGCTTCGCCGACGAACAAAACCGCCGTTCAGTGCCGTCACAAAATGGAGAAACTGAGGAAACGTTACCGATCTGAGATTCAACGAATCAGATCTCTCCCGATTCCGAAATCTCGTTCGTCTTCTTCTTGGGCTCATTTCAAATCCATGGATTCCATGGAAAAAGGTCCTTCTCCTCCTTCTCCACCTTCTCCACTTTCTCCACCACCAAAGCTAGAAAATCATAACCATAACTATAACCATCTCAACCACCGTGAAACCCTAGTTGATAACGATGATCTCGACGATGACGATCTTTACGAGGAACTCAGAAGCGGTGCCGGAAACACCAGAAATCTTGATAAATTCTACCGGAATGGATCTGCCGGCGGTGGATTCCGGATCCGGATCCCAACCGGTGTGAGTGTTGCGCAACCTGGATCTAAATTCTACGGTGGACACCAACAGAAAATGAACATGAACATGAATATTAACCAATCAGAATCAGGTTCTCGCGGTGGTTATATCAACGGCGGAACAAGGCTTGTTAAGGAGAAGATTGGGTTGGGGAAGAGAGAAAGAGAGAGAGAGGTGGAGAGAGAAAGAGATCCTATTGGTGAAATGGTGAATGCTATTAAGTTTTTGAGAGATGGGTTTGTGAGGATGGAACAGATGAAGATGGAGATGGCTAGAGAGATTGAAACGATGCGAATGGAGATGGAGATGAAGCGAACTGAGATGATTCTTGAGTCTCAGCAGAGGATTGTTGAAGCCTTTGCGAAAGCGGTTTCGGAGAAGAACAAGAAGAGGAAACTGCATAAGGGTAATAGTAACAGCAACAACAACAACATAGCTTCGCCTTCGGAATCGTAG 1092 0.4853 MAATSSPTDSNPPSAVPLPLSLPAPPPPTTSRRLPPPCWTPEETSALIDAYRDKWYSLGRTNLKAIHWQEVADAVTARCPNASPTNKTAVQCRHKMEKLRKRYRSEIQRIRSLPIPKSRSSSSWAHFKSMDSMEKGPSPPSPPSPLSPPPKLENHNHNYNHLNHRETLVDNDDLDDDDLYEELRSGAGNTRNLDKFYRNGSAGGGFRIRIPTGVSVAQPGSKFYGGHQQKMNMNMNINQSESGSRGGYINGGTRLVKEKIGLGKREREREVERERDPIGEMVNAIKFLRDGFVRMEQMKMEMAREIETMRMEMEMKRTEMILESQQRIVEAFAKAVSEKNKKRKLHKGNSNSNNNNIASPSES 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03072 363 MobiDBLite consensus disorder prediction 114 128 - -
Vivi6g03072 363 MobiDBLite consensus disorder prediction 108 158 - -
Vivi6g03072 363 Gene3D - 39 105 - -
Vivi6g03072 363 MobiDBLite consensus disorder prediction 12 35 - -
Vivi6g03072 363 MobiDBLite consensus disorder prediction 338 363 - -
Vivi6g03072 363 Pfam Myb/SANT-like DNA-binding domain 37 133 IPR044822 -
Vivi6g03072 363 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 14 339 IPR044823 -
Vivi6g03072 363 MobiDBLite consensus disorder prediction 136 150 - -
Vivi6g03072 363 MobiDBLite consensus disorder prediction 349 363 - -
Vivi6g03072 363 MobiDBLite consensus disorder prediction 1 38 - -
Vivi6g03072 363 ProSiteProfiles Myb-like domain profile. 39 100 IPR001005 -
Vivi6g03072 363 FunFam Trihelix transcription factor ASIL2 39 105 - -
Vivi6g03072 363 SMART 118neu2 46 138 IPR006578 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03072 Vivi-Chr6 118566760 118568641 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03072 38 133 Trihelix Transcription Factor Family AT3G14180 33.333 1.43e-13 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vivi6g03072 Myb_DNA-bind_4 1.3e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03072 - - mtr:11426900 428.328