LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi6g03059	ATGGGTGCCGCTGAAAACGTTCACGATGAAGATGGAACCTTGGAGATTGGAATGGAATATAGAACTGTTTCTGGGGTTGCTGGACCATTGGTTATTCTCGAAAAAGTTAAGGGTCCTAAGTATCAAGAGATTGTTAATATTCGGTTAGGAGATGGAACTACTAGGCGTGGCCAAGTTCTAGAAGTTGATGGTGAAAAAGCTGTTGTTCAGGTTTTTGAAGGCACATCTGGGATTGACAATAAATTCACAACTGTTCAATTTACTGGAGAGGTGTTAAAAACTCCTGTATCACTGGACATGCTTGGCCGCATTTTCAATGGTTCAGGAAAACCAATTGATAATGGTCCACCCATATTGCCTGAGGCTTACTTGGATATATCAGGAAGTTCCATCAACCCTAGTGAGAGAACCTATCCAGAAGAGATGATTCAGACAGGAATATCTACAATTGATGTCATGAATTCTATTGCTAGAGGTCAAAAGATCCCTCTATTTTCAGCTGCTGGTCTTCCACATAATGAAATTGCTGCACAGATATGTCGCCAGGCTGGCTTAGTCAAGCGACTAGAGAAATCTGATAATCTTCTCGAGGGTGGAGGAGAGGACGACAATTTTGCTATTGTGTTTGCTGCCATGGGAGTTAACATGGAGACTGCACAGTTTTTCAAACGTGACTTTGAAGAGAACGGCTCTATGGAGAGGGTGACCCTTTTCCTTAATCTGGCAAATGACCCTACAATTGAGCGTATCATCACTCCTCGTATTGCTCTTACTACTGCTGAATATTTGGCATATGAATGCGGCAAGCACGTTCTTGTGATACTCACAGATATGAGTTCTTATGCTGATGCTCTTCGTGAGGTATCTGCTGCCCGAGAAGAAGTGCCTGGTAGACGTGGGTATCCTGGTTACATGTATACAGATCTTGCAACAATATACGAACGTGCTGGAAGAATCGAGGGGCGAAAAGGCTCTATCACGCAAATTCCAATTCTGACCATGCCTAACGATGATATTACACATCCAACTCCTGATCTTACTGGATATATCACTGAGGGGCAGATATATATTGACAGGCAGCTGCATAACAGACAGATATATCCACCAATCAATGTCCTTCCATCGCTCTCCCGTTTAATGAAGAGTGCCATTGGAGAGGGAATGACACGAAAGGATCACTCTGATGTGTCCAACCAGCTCTATGCAAATTATGCCATTGGAAAAGATGTCCAAGCAATGAAAGCTGTGGTCGGAGAAGAAGCACTTTCGTCTGAGGATCTGCTGTATCTGGAATTTCTGGACAAGTTTGAGAGGAAGTTTGTTGCGCAAGGAGCTTATGATACCCGAAACATCTTCCAGTCTCTAGATCTTGCATGGACTTTGCTTCGTATTTTCCCTCGCGAGCTTCTTCATCGTATACCGGCAAAGACACTCGATCAGTTCTACAGCCGAGATGCCGGAAACTGA	1467	0.4369	MGAAENVHDEDGTLEIGMEYRTVSGVAGPLVILEKVKGPKYQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKSDNLLEGGGEDDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQFYSRDAGN	488

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi6g03059	488	Pfam	ATP synthase alpha/beta family, nucleotide-binding domain	146	377	IPR000194	GO:0005524
	Vivi6g03059	488	CDD	V_A-ATPase_B	91	385	-	-
	Vivi6g03059	488	Pfam	ATP synthase alpha/beta family, beta-barrel domain	23	89	IPR004100	GO:0046034\|GO:1902600
	Vivi6g03059	488	ProSitePatterns	ATP synthase alpha and beta subunits signature.	368	377	IPR020003	GO:0005524
	Vivi6g03059	488	NCBIfam	V-type ATPase subunit B	19	486	IPR005723	GO:0033180\|GO:0046961\|GO:1902600
	Vivi6g03059	488	PIRSF	V-ATPsynth_beta/V-ATPase_B	10	488	IPR022879	-
	Vivi6g03059	488	Hamap	V-type ATP synthase beta chain [atpB].	17	486	IPR022879	-
	Vivi6g03059	488	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	93	383	IPR027417	-
	Vivi6g03059	488	CDD	ATP-synt_V_A-type_beta_C	387	481	-	-
	Vivi6g03059	488	PANTHER	V-TYPE PROTON ATPASE SUBUNIT B	7	485	IPR022879	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi6g03059	Vivi-Chr6	118224786	118229150	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi6g03059	1	488	Primary Pumps ATPases(2)	AT4G38510	97.541	0.0	970

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi6g03059	K02147		-	gmx:100814088	945.266

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