Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03059 ATGGGTGCCGCTGAAAACGTTCACGATGAAGATGGAACCTTGGAGATTGGAATGGAATATAGAACTGTTTCTGGGGTTGCTGGACCATTGGTTATTCTCGAAAAAGTTAAGGGTCCTAAGTATCAAGAGATTGTTAATATTCGGTTAGGAGATGGAACTACTAGGCGTGGCCAAGTTCTAGAAGTTGATGGTGAAAAAGCTGTTGTTCAGGTTTTTGAAGGCACATCTGGGATTGACAATAAATTCACAACTGTTCAATTTACTGGAGAGGTGTTAAAAACTCCTGTATCACTGGACATGCTTGGCCGCATTTTCAATGGTTCAGGAAAACCAATTGATAATGGTCCACCCATATTGCCTGAGGCTTACTTGGATATATCAGGAAGTTCCATCAACCCTAGTGAGAGAACCTATCCAGAAGAGATGATTCAGACAGGAATATCTACAATTGATGTCATGAATTCTATTGCTAGAGGTCAAAAGATCCCTCTATTTTCAGCTGCTGGTCTTCCACATAATGAAATTGCTGCACAGATATGTCGCCAGGCTGGCTTAGTCAAGCGACTAGAGAAATCTGATAATCTTCTCGAGGGTGGAGGAGAGGACGACAATTTTGCTATTGTGTTTGCTGCCATGGGAGTTAACATGGAGACTGCACAGTTTTTCAAACGTGACTTTGAAGAGAACGGCTCTATGGAGAGGGTGACCCTTTTCCTTAATCTGGCAAATGACCCTACAATTGAGCGTATCATCACTCCTCGTATTGCTCTTACTACTGCTGAATATTTGGCATATGAATGCGGCAAGCACGTTCTTGTGATACTCACAGATATGAGTTCTTATGCTGATGCTCTTCGTGAGGTATCTGCTGCCCGAGAAGAAGTGCCTGGTAGACGTGGGTATCCTGGTTACATGTATACAGATCTTGCAACAATATACGAACGTGCTGGAAGAATCGAGGGGCGAAAAGGCTCTATCACGCAAATTCCAATTCTGACCATGCCTAACGATGATATTACACATCCAACTCCTGATCTTACTGGATATATCACTGAGGGGCAGATATATATTGACAGGCAGCTGCATAACAGACAGATATATCCACCAATCAATGTCCTTCCATCGCTCTCCCGTTTAATGAAGAGTGCCATTGGAGAGGGAATGACACGAAAGGATCACTCTGATGTGTCCAACCAGCTCTATGCAAATTATGCCATTGGAAAAGATGTCCAAGCAATGAAAGCTGTGGTCGGAGAAGAAGCACTTTCGTCTGAGGATCTGCTGTATCTGGAATTTCTGGACAAGTTTGAGAGGAAGTTTGTTGCGCAAGGAGCTTATGATACCCGAAACATCTTCCAGTCTCTAGATCTTGCATGGACTTTGCTTCGTATTTTCCCTCGCGAGCTTCTTCATCGTATACCGGCAAAGACACTCGATCAGTTCTACAGCCGAGATGCCGGAAACTGA 1467 0.4369 MGAAENVHDEDGTLEIGMEYRTVSGVAGPLVILEKVKGPKYQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKSDNLLEGGGEDDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQFYSRDAGN 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03059 488 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 146 377 IPR000194 GO:0005524
Vivi6g03059 488 CDD V_A-ATPase_B 91 385 - -
Vivi6g03059 488 Pfam ATP synthase alpha/beta family, beta-barrel domain 23 89 IPR004100 GO:0046034|GO:1902600
Vivi6g03059 488 ProSitePatterns ATP synthase alpha and beta subunits signature. 368 377 IPR020003 GO:0005524
Vivi6g03059 488 NCBIfam V-type ATPase subunit B 19 486 IPR005723 GO:0033180|GO:0046961|GO:1902600
Vivi6g03059 488 PIRSF V-ATPsynth_beta/V-ATPase_B 10 488 IPR022879 -
Vivi6g03059 488 Hamap V-type ATP synthase beta chain [atpB]. 17 486 IPR022879 -
Vivi6g03059 488 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 93 383 IPR027417 -
Vivi6g03059 488 CDD ATP-synt_V_A-type_beta_C 387 481 - -
Vivi6g03059 488 PANTHER V-TYPE PROTON ATPASE SUBUNIT B 7 485 IPR022879 -
Vivi6g03059 488 Gene3D - 28 487 - -
Vivi6g03059 488 CDD ATP-synt_V_A-type_beta_N 19 90 - -
Vivi6g03059 488 FunFam V-type proton ATPase subunit B, brain 28 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03059 Vivi-Chr6 118224786 118229150 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03059 1 488 Primary Pumps ATPases(2) AT4G38510 97.541 0.0 970
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03059 K02147 - gmx:100814088 945.266