Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03058 ATGGCCGGCATAGACTTGGGTTCAGCATCACAACACTTTGTTCATCGTCTTCAACGCCCTGACCTAGAAGTTCATGATGAGAGTCAAGATCAAGATGGAAACAATAACCATGAAGGGCTTGATCTAGTTTCACCGAATCACGGACTCGGTGATGTTGTTGGTCGTAGACCACGGGGCAGACCTCCGGGTTCAAAGAACAAACCTAAACCACCGGTGATCATCACAAGAGAGAGTGCAAACACGCTTAGGGCTCATATTCTTGAGGTTAGTAGTGGTTGCGATGTGTTTGACTCGGTCGCTACCTATGCGAGGAAGCGTCAACGAGGGATCTGTGTTCTTAGTGGCAGTGGAACTGTCACTAACGTGACCCTGCGGCAGCCAGCTGCAGCAGGGTCTGTTGTGACACTTCACGGAAGATTTGAGATATTGTCTTTGTCTGGATCGTTTCTACCACCCCCGGCTCCACCGGGGGCAACGAGTTTGAGTGTGTTTCTTGGTGGAGGTCAAGGTCAAGTTGTTGGAGGAAATGTTGTAGGTCCTTTGGTTGCTTCTGGGCCGGTTATCGTTATTGCTTCGTCGTTTACTAACGTAGCGTACGAGCGGTTACCATTAGACGAAGACGAATCTCTTCAGATGCAACAAGGGCAATCATCTGCAGGAGGTGGTGGTGGCGGGGGTGGTGCTGATGGTATTAATAACTCTTTTCCGGACCCGTCTTCGGGCCTTCCATTCTTCAACTTACCTCTAAATATGCCTCAACTACCTGTGGATGGTTGGGCTGGAAACTCTGGAGGAAGACAATCTTATTGA 810 0.4951 MAGIDLGSASQHFVHRLQRPDLEVHDESQDQDGNNNHEGLDLVSPNHGLGDVVGRRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVSSGCDVFDSVATYARKRQRGICVLSGSGTVTNVTLRQPAAAGSVVTLHGRFEILSLSGSFLPPPAPPGATSLSVFLGGGQGQVVGGNVVGPLVASGPVIVIASSFTNVAYERLPLDEDESLQMQQGQSSAGGGGGGGGADGINNSFPDPSSGLPFFNLPLNMPQLPVDGWAGNSGGRQSY 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03058 269 CDD DUF296 83 165 IPR005175 -
Vivi6g03058 269 FunFam AT-hook motif nuclear-localized protein 82 209 - -
Vivi6g03058 269 SUPERFAMILY AF0104/ALDC/Ptd012-like 79 210 - -
Vivi6g03058 269 Pfam Plants and Prokaryotes Conserved (PCC) domain 83 196 IPR005175 -
Vivi6g03058 269 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 28 221 IPR014476 GO:0003680
Vivi6g03058 269 MobiDBLite consensus disorder prediction 24 72 - -
Vivi6g03058 269 MobiDBLite consensus disorder prediction 208 246 - -
Vivi6g03058 269 Gene3D - 82 217 - -
Vivi6g03058 269 ProSiteProfiles PPC domain profile profile. 79 216 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03058 Vivi-Chr6 118193635 118194992 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03058 1 266 AT-hook Motif Nuclear Localized (AHL) Family AT4G17800 63.399 2.66e-101 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03058 - - gmx:100803960 415.231