Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03048 TACCTTGGTACAGTCGTGAACTCGCGACAAATTGACACCGTTCCTCTTCGCGGTGGCGCTTCGGTTTCTCGAAAACTTGAGTCGCCGGAGCTCCGTCCTCTCCCGCCGTTAGCGCGACTGCCGGAACCTCCATTACCACCGCATCGTGACAACACTTATTCAGATGAAGAAGACGAGGAGTTTTACTCGCCGAGAGGCTCCTCTCTTGGTGTTATAGAAAGCTCAGGCGGCACAGGTTCGGGTTCCCGACGAGCATTCTCCGCCATAGCCGCTGGAAGAGGCGGCGAATCTAGTTCAATTTCATGTTCTTCCTCTTCTTTCGGTTCTCCGGCGCAGTCTCATTCGATTAGCCTCTCACCGCCGGCGAGTTCTAGTCCCCGGAGAACACAACCAAAATCACCTGAAACTACACCAATTCAGAACCAACATGTGCAATATCATCCTTCTTCTTCATCGTCATTCTCTTCATCACGTTCAACACCAGAGAGAGATTTCGATGGAGAAAAAGAAAATGCTTCTTTACCCTCAAATGCACATGCATCATCATCATCATCATCAGTGTCATTACAAGAGAGATTCATGGAGAAAACTGAAAACGCTTCTTTACCAGAACAACAACCAAGGTTATCCAATCATTCTAGTGCTTCATCTTCAGCTTTTTCTCTTCCTTCTTCACCGGAGGAAATGACAATGATGCATCAAGGTTTTGATCAGTCTCCACGAATGTCGAGTGTCTCCGACGGGTTAAAGCTACCCGGTCTGTCATCATTGCCATTGTCACCCGCCCTACTTTCATCGCCTGAAACAGAAAGAGGAGGGTTTAGCTGCAATCCAAATCAATGGGGAACATTTTCTTATGCTATGCATGCGCCACAGAGGAAACATTGGGAGGTACCGGTTCTCCCAAAGCCTATAGCTCCTCCACCGCCTCCTCCTCTGCCACGGCAGAGGAGGCATTGGGAAATGTCAGCAACCTCGGCTATTGTTGATCAGCCTCGGTCGATTTTGAAGCCACCTGTGTTAGCACCTCCTTCGAGGCCTTTCGTGTTGCAAAACCAAACAACAAATGAGTCTTTGGGGGAAATTGAAGAGAGTTCGAAACTTAAATTGAAGCCATTGCATTGGGACAAAGTGAGAACAAGTTCTGATCGCGAAATGGCATGGGATCAGATGAATTCCATGTCGTTTAAATTGAATGAGGAAATGATTGAGACATTGTTTGTAGTGAACACATCAAACCAAAAGCCGAAGGATACTACTCCACGTTCCGTTCTTCCCTTGCCAAACCAGGAGAACAGAGTACTCGATCCGAAGAAGTCTCAAAATATTGCAATCTTACTCAAGGCTCTTAATGTCACAATAGAAGAAGTGTGTGAAGCACTTTTAGATGGTAGTAGTGATACACTTGGAGCAGAGCTACTTGAAAGTTTGTTAAAAATGGCACCAACCAAGGAAGAAGAACGTAAATTGAAGGAGCATAAAGATGACTCACCGACCAAGCTTGATGTGGCTGAGAACTTCTTGAAGGCGATGCTTGATATACCTTTTGCATTTAAAAGGGTTGAAGCAATGCTTTACATGATCAACTTTCAATCTGAAATAGAGTATCTTAGAAAATCATTTCAAACTCTAGAGGTTGCTTGTGAAGAATTGCGAAGTTGTAGAATGTTCTTGAAGCTTCTAGAGGCTGTACTTAAAACTGGGAACAGAATGAACGTGGGAACAAACCGCGGTGACGCAGAGGCCTACAAACTCGATACACTTCTCAAATTGGCTGATGTCAAAGGTGCAGATGGGAAAACCACTCTACTGCATTTTGTCGTACAGGAAATTATTAGAACCGAAGGTGCTCGTCTCTCTTCTGCTAACCAGACTACAAACTCTACTTTGACCGAAGATCTTAAGTGCAGGAGACTTGGCCTACAAGTTGTTTCTAATCTGAGTTCAGAGCTATCAAATGTAAAAAGGGCCGCTACTATGGATTCCGAACTTCTCAGCAGCGACGTCTCTAAACTTTCCGAAGGAGCTACAAACATAGCTGAGATTGTGCAATTAATCGAAAAGACAGGTTTGGATGAAACCAGTCGTAAATTTACAGAATCGATGAACAATTTCGTTAGAATGGCTGAGGAGGAAATCACAAAACTTCAAGCGCAAGAAAGTGTTGCTTTGACCCTCGTGAAGGAGGTTACAGAATACTTTCATGGAAACTTATCAAAGGAAGAAGCTCATCCGTTAAGAATCTTCTTTGTTGTAAGAGATTTTATAGCGGTTCTTGACCGTGTCTGCAAAGAAGTCGGTATGATAAACGAGCGAACTACGGTTAGTTCGGCTCATAAATTTCCTGTTCCGGTTAATCCAATGCTTCCACAACCTCTTCCTGGATTACATGAAAGGAAACATTGTAGTAACTCTTCAGATGGTGAAAGTTCATCAACTTAG 2442 0.4423 YLGTVVNSRQIDTVPLRGGASVSRKLESPELRPLPPLARLPEPPLPPHRDNTYSDEEDEEFYSPRGSSLGVIESSGGTGSGSRRAFSAIAAGRGGESSSISCSSSSFGSPAQSHSISLSPPASSSPRRTQPKSPETTPIQNQHVQYHPSSSSSFSSSRSTPERDFDGEKENASLPSNAHASSSSSSVSLQERFMEKTENASLPEQQPRLSNHSSASSSAFSLPSSPEEMTMMHQGFDQSPRMSSVSDGLKLPGLSSLPLSPALLSSPETERGGFSCNPNQWGTFSYAMHAPQRKHWEVPVLPKPIAPPPPPPLPRQRRHWEMSATSAIVDQPRSILKPPVLAPPSRPFVLQNQTTNESLGEIEESSKLKLKPLHWDKVRTSSDREMAWDQMNSMSFKLNEEMIETLFVVNTSNQKPKDTTPRSVLPLPNQENRVLDPKKSQNIAILLKALNVTIEEVCEALLDGSSDTLGAELLESLLKMAPTKEEERKLKEHKDDSPTKLDVAENFLKAMLDIPFAFKRVEAMLYMINFQSEIEYLRKSFQTLEVACEELRSCRMFLKLLEAVLKTGNRMNVGTNRGDAEAYKLDTLLKLADVKGADGKTTLLHFVVQEIIRTEGARLSSANQTTNSTLTEDLKCRRLGLQVVSNLSSELSNVKRAATMDSELLSSDVSKLSEGATNIAEIVQLIEKTGLDETSRKFTESMNNFVRMAEEEITKLQAQESVALTLVKEVTEYFHGNLSKEEAHPLRIFFVVRDFIAVLDRVCKEVGMINERTTVSSAHKFPVPVNPMLPQPLPGLHERKHCSNSSDGESSST 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03048 813 ProSiteProfiles Formin homology-2 (FH2) domain profile. 360 785 IPR015425 -
Vivi6g03048 813 MobiDBLite consensus disorder prediction 94 160 - -
Vivi6g03048 813 MobiDBLite consensus disorder prediction 49 63 - -
Vivi6g03048 813 Pfam Formin Homology 2 Domain 365 759 IPR015425 -
Vivi6g03048 813 PANTHER FORMIN-RELATED 169 805 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Vivi6g03048 813 MobiDBLite consensus disorder prediction 34 48 - -
Vivi6g03048 813 MobiDBLite consensus disorder prediction 174 245 - -
Vivi6g03048 813 MobiDBLite consensus disorder prediction 787 813 - -
Vivi6g03048 813 Gene3D Formin, FH2 domain 366 780 IPR042201 -
Vivi6g03048 813 MobiDBLite consensus disorder prediction 413 427 - -
Vivi6g03048 813 MobiDBLite consensus disorder prediction 413 432 - -
Vivi6g03048 813 SMART it6_source 360 774 IPR015425 -
Vivi6g03048 813 MobiDBLite consensus disorder prediction 1 247 - -
Vivi6g03048 813 SUPERFAMILY Formin homology 2 domain (FH2 domain) 307 771 - -
Vivi6g03048 813 MobiDBLite consensus disorder prediction 68 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03048 Vivi-Chr6 118027945 118031128 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03048 326 801 FH2 protein (formin) Gene Family AT3G25500 70.204 0.0 686