Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03040 ATGAAGATGGTTTTGAGTAGTGCTTCTGTTACTGTTAATTTCTTTCTGCTGATTAGTTGTTTCATCATGAGCTATGGTACTGAGAGTGACATATTATGCTTGAAAAAAGTGAAAGAAACACTTAAAGACCCAAACAATTACTTGCAATCTTGGAATTTTAACAATAGAACTGAAGGGTTTATTTGCAAGTTCACTGGGGTTGAATGTTGGCATCCTGATGAAAGTAGGGTTTTGAATCTCAAACTTTCGAATATGGGACTTAAGGGAGAGTTTCCTCGCGGCATTAAGAATTGCTCGAGCTTAACAGGATTGGATCTTTCGATGAACAGTCTCTCGAAAAGCATTCCAAATGATATATCTAGCCTTGTTCAATATGTGGTTTCTCTTGATCTGTCTTCGAATGATTTTACGGGGGAGATTCCTGTGTCGCTTAGTAATTGTTCCTATCTTAATAGTCTTAAACTCGACCAAAACCAACTCACCGGTCAAATTCCTCCGCAATTTGCTTCACTGACAAGGATTAAGACGTTTAGTGTTTCGAATAATCTTTTGTCCGGACCAGTTCCGAATTTTAGGGAAGGTATAGTTACAAAAGATGATTATGCAAATAATTCAGCACTCTGCGGCGCTCCGTTGGTTGCTTGCAGCGGGTCTTCGAAGACTAACACTGCGGTTATAGCGGGAGCAGCTGCTGGTGGTGTGACTCTTGCAGCATTAGGAGTGGGGGTTGGAATGCTTTTCTATGTGCGCAGTCTTTCGCGCAGGAAAAAGGAAGAAGATCCTGAAGAAAACAAGTGGGCGAGAATCCTAAAGGGAACCAAAAAAATTAAGGTTTCAATGTTTGAGAAGTCGATTTCAAAAATGAGCTTGAGTGATCTCATGAAGGCTACGAATAACTTCAGCAAAAGCAATGTCATTGGGACTGGAAGATCAGGAACTGTTTACAAAGCTGTCCTCGTTGACGGCACATCACTCATGGTTAAGAGATTGCTGGAATCTCAACACTCGGAGCAAGAGTTTACAGCTGAGATGGCTACACTAGGAACAGTGCGACATCGAAACTTGGTTCCTCTTTTAGGTTTTTGCCTCGCCAAAAAGGAGAGATTTTTGGTCTATAAAAATATGCCAAACGGTACTCTTCACAACCAACTACATCCTGAAACTGGCGAATGCACTATGGAGTGGTCTACACGGCTCAAAATTGCAATCGGAGCAGCCAAAGGATTCGCATGGCTTCATCACAATTGCAATCCGCGGATCATTCACCGAAACATAAGCTCTAAGTGCATCTTGTTGGATGCAAATTTCGAGCCTAAAATATCAGATTTCGGTCTTGCCAGATTAATGAACCCGATCGATACTCATTTGAGTACTTTTGTAAACGGCGAGTTTGGTGATTTAGGCTACGTTGCTCCCGAGTATACAACAACTCTGGTGGCTACACCTAAGGGCGATGTTTACAGCTTTGGAACTGTGCTTCTCGAGCTGGTAACTGGCGAAAGACCTACACATATTTCAAAAGCTCCAGAAACTTTTAAAGGAAATTTGGTAGAATGGATCATGCAGCAATCAGTCAACGCAAGCCTAAAAGACGCAATCGATGAATCACTAATTGGAAAAGGTGTTGATCATGAACTTTTTCAGTTTCTTAAGGTTGCTTGCAACTGTGTTACTTCAACTGCAAAGGAGAGGCCGACGATGTTCGAAGTATATCAGTTTCTAAGAGAGATTGGAAGTAAATATAATTTCGCAACTGAGGATGAGATAATGGTGCTTACAGAAAATGGTGATGCTGGTAAGTTGGAAGAACTTATCGTAGCGCGCGAGGCATAA 1833 0.4157 MKMVLSSASVTVNFFLLISCFIMSYGTESDILCLKKVKETLKDPNNYLQSWNFNNRTEGFICKFTGVECWHPDESRVLNLKLSNMGLKGEFPRGIKNCSSLTGLDLSMNSLSKSIPNDISSLVQYVVSLDLSSNDFTGEIPVSLSNCSYLNSLKLDQNQLTGQIPPQFASLTRIKTFSVSNNLLSGPVPNFREGIVTKDDYANNSALCGAPLVACSGSSKTNTAVIAGAAAGGVTLAALGVGVGMLFYVRSLSRRKKEEDPEENKWARILKGTKKIKVSMFEKSISKMSLSDLMKATNNFSKSNVIGTGRSGTVYKAVLVDGTSLMVKRLLESQHSEQEFTAEMATLGTVRHRNLVPLLGFCLAKKERFLVYKNMPNGTLHNQLHPETGECTMEWSTRLKIAIGAAKGFAWLHHNCNPRIIHRNISSKCILLDANFEPKISDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYTTTLVATPKGDVYSFGTVLLELVTGERPTHISKAPETFKGNLVEWIMQQSVNASLKDAIDESLIGKGVDHELFQFLKVACNCVTSTAKERPTMFEVYQFLREIGSKYNFATEDEIMVLTENGDAGKLEELIVAREA 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03040 610 FunFam Leucine-rich repeat receptor-like protein kinase 27 190 - -
Vivi6g03040 610 SUPERFAMILY Protein kinase-like (PK-like) 277 574 IPR011009 -
Vivi6g03040 610 CDD STKc_IRAK 306 577 - -
Vivi6g03040 610 ProSiteProfiles Protein kinase domain profile. 300 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g03040 610 Gene3D Phosphorylase Kinase; domain 1 262 373 - -
Vivi6g03040 610 Pfam Protein tyrosine and serine/threonine kinase 303 574 IPR001245 GO:0004672|GO:0006468
Vivi6g03040 610 SUPERFAMILY L domain-like 27 193 - -
Vivi6g03040 610 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 375 588 - -
Vivi6g03040 610 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 46 191 - -
Vivi6g03040 610 Pfam Leucine rich repeat N-terminal domain 28 70 IPR013210 -
Vivi6g03040 610 Gene3D Ribonuclease Inhibitor 27 217 IPR032675 -
Vivi6g03040 610 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Vivi6g03040 610 Gene3D Transferase(Phosphotransferase) domain 1 375 597 - -
Vivi6g03040 610 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 261 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03040 Vivi-Chr6 117953409 117956169 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03040 15 588 Receptor kinase-like Gene Family AT3G28450 46.312 0.0 530
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Vivi6g03040 PK_Tyr_Ser-Thr 2.5e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03040 - - gmx:100817267 944.11