Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03037 ATGGAGGAATCATTGGAGAATCTTATTTCTTATATGGAAATGGAAGATGAAGTGATGGATCAAAGCAGTAACTCATTTGATGAGCAAGAGTTTCTCAAAGATATCATCCTTGAAGAACCAGAATGTGAACCTTTTTCTTATCTTTGTTCCAATGAAATCCAAACCAACACTTCCATTTCTGCAGGAAATATTAACATTGAAGGTGGTGTCACTAGTCCCACAAATAGTATTTTGTCCTTTGATCATGATATAGAAGCAATCCACAAAAGTTATAGTTCAAACTCTATAATTTCATTGGAAAGATCTTGTGTTAACGTTGGTTCTCCAGCTACATACCTTTTATCTTTTGATAATTTGAGTGTTGAACCGATTGTTGAACCAATGTCAAATAAAAGAAGGAGTGTGAAGAAGGATGAAAGAAAGGTGAAGGAAGCAACAAAGAGGGTTAGAAGGTCTTGTGAGACAGTGCAAGATCATTTGATGGCTGAGAGGAAAAGGAGAAGGGAGTTGACTGAGAGTATTATAACTCTTTCAGCTATGATTCCTGGCTTGAAAAAGATGGACAAGTGCTATGTACTTAGTGAAGCTGTGAATTACACAAAACAGCTTCAAAAACGGATTAAGGAGTTGGAGAATAATCAAAACAAAGATAGTAACATAGTAACTAATCCAGCAATATTCAAGTGGAAATCTCAAGCTTCAACAAACAAAAGGAAGTACTCAGAATCACTACTTGAGGTTGAAGCTAGAATGATGAAAAAGGAAGTACTTGTTAGAATTCATTGTGAGAAGAAAAAGGACATAGTGCTCAAAATACATGAGTTGCTTGAAAAGTTCAATCTCACTATAACCAGTAGTAGTGTATTGCCATTTGGTGCTTCAGTTCTTGTAATTAACATTTTTGCTCAGATGGATGAAGAAGACAGCATAAGCATGGATGAGCTTGTGAAAAATCTGAAAAAATATCTGTTGGAGGTATGTGGGAATCAATAA 993 0.3535 MEESLENLISYMEMEDEVMDQSSNSFDEQEFLKDIILEEPECEPFSYLCSNEIQTNTSISAGNINIEGGVTSPTNSILSFDHDIEAIHKSYSSNSIISLERSCVNVGSPATYLLSFDNLSVEPIVEPMSNKRRSVKKDERKVKEATKRVRRSCETVQDHLMAERKRRRELTESIITLSAMIPGLKKMDKCYVLSEAVNYTKQLQKRIKELENNQNKDSNIVTNPAIFKWKSQASTNKRKYSESLLEVEARMMKKEVLVRIHCEKKKDIVLKIHELLEKFNLTITSSSVLPFGASVLVINIFAQMDEEDSISMDELVKNLKKYLLEVCGNQ 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03037 330 Coils Coil 193 220 - -
Vivi6g03037 330 PANTHER BHLH TRANSCRIPTION FACTOR 13 323 - -
Vivi6g03037 330 Gene3D - 162 253 IPR036638 GO:0046983
Vivi6g03037 330 SMART finulus 160 209 IPR011598 GO:0046983
Vivi6g03037 330 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 159 213 IPR036638 GO:0046983
Vivi6g03037 330 Coils Coil 128 148 - -
Vivi6g03037 330 Pfam Helix-loop-helix DNA-binding domain 158 204 IPR011598 GO:0046983
Vivi6g03037 330 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 154 203 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03037 Vivi-Chr6 117853983 117857604 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03037 150 325 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22770 36.634 1.25e-33 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi6g03037 HLH 7.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03037 - - tpra:123888201 456.447