Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03016 ATGGCTTCTATGAACTTGTTAGGTTTTTCTCTCTCACCACAAGAACAACACCCATCTTCTACTCAAGACCAAACGGTGGTGCCTTCTCTTTTTGGTTTCAACCCTCACGATGATGGTTCTGGTGTTCAACAAGGAGATCACTGCTTTGATCTCACTTCTCACTCATCAACTCCTCACCATCTTTCTCATCCTTTTTCCATTTATGATGCTTTCCACACCAATAACAACATTCATACCACTCAAGATTGGAAAGAGAACTATAACAACCAAACTCTACTATTGGGAAGTTCATGCATTAACCAAAATGGGAATAATAGTCATCAACAGGTGCAACCGAAGCTAGAGAACTTCCTTGGTGGAAACTCTTTCACCGATCATCAGAATGAATACGGTGGCAACAACAACAACTCTTACTCTTCGTTACACCTTCCGGTTACTCAGCCGGAACAATCTTGTGGCGGCGGTGGTGGTGGTGATGATGATAGCACAAATAACAACAATAATAACTCCATAGGTTTATCCATGATAAAAACATGGCTGAGAAACCAACCACCACCAGAAAACAACAACAACAATGAAACTGGAGCAGCACGTGTGCAGACACTGTCACTCTCCATGAGTACTGGTTCGCAGTCAAGCTCATCGGTGCCTCTTCTCAATGCAAACGCAACGAACGGTGAGATTTCATCGTCGGAAAACAAACAGCCACCTACAACTGCTGTAGTACTTGATAGCAACCAAACCGGTTCTATTGTTGAAACTGCTGCGCCTAGGAAATCCATTGATACATTTGGACAAAGAACTTCCATCTACCGCGGTGTAACAAGGCATAGATGGACCGGAAGATATGAAGCTCATCTTTGGGATAACAGTTGCAGAAGGGAGGGACAAACTCGCAAAGGAAGACAAGTTTACTTAGGAGGATATGACAAAGAAGAAAAAGCAGCTAGAGCCTATGATTTAGCAGCACTAAAATACTGGGGAACAACTACAACAACAAATTTTCCTATAAGCCATTATGAAAAAGAGTTGGAAGAAATGAAGCACATGACAAGGCAAGAGTATGTTGCGTCATTGAGAAGGAAAAGTAGTGGTTTTTCACGCGGTGCATCCATTTACCGAGGAGTAACTAGACATCATCAACATGGTAGATGGCAAGCAAGGATTGGAAGAGTTGCAGGCAACAAAGATCTCTACCTAGGAACTTTCAGCACTCAAGAAGAGGCAGCAGAGGCATATGATGTAGCAGCCATAAAATTCAGAGGACTAAGTGCAGTTACGAATTTCGACATGAGCCGATATGATGTGAAAACCATACTCGAGAGCAGCACTTTACCGATCGGTGGTGCTGCAAAGCGTTTGAAAGATATGGAGCAAGTTGAATTATTGAGTGTGAATGTGGTGGATAATATCGGCCATAGTAGAGCCGAACAAGATCATCATGGCATCATCAATAACACTACTAATTCCCTTTTAACAGATCAAGCCATGAATAACTATGCAGCAGCTAACTGGCATGCTCTTTCATTCCAACAACAACACCCTTACAATACCAACATGCAGTTACAGCATTATCCTTATGGATCACAAACTCAAACTCAGAAGCTTTGGTGCAAACAAGAACAAGATTCTGATGATCATAATACTTATACTACTACTGATCATATTCATCATCAACAGCTACAGTTAGGGAATAATCACAATAACAATAACACTCACAATTTCTTTGGTTTGCAAAATATCATGAGTATGGATTCTGCTTCCATGGATAATAGTTCTGGTTCAAATTCTGTTGTTTATGGTGGTGGAGATCATGGTGGCTATGGAGGAAATAATGGATATATGATTCCAATGGCTACTACTACTGTTATTGGAAATGATGGTAGTAACCAAAACCAAAATCAAAGAAGCAGCAACAACAGTTTTGGTGACAGTGATCAGATAAAGGGATTTGGTTATGAGAATATTTTTGGAGCTACTGATCCTTATCATGCACATGCAAGGAATTTGTACTATCAGCAGCAACAGTTATCTGTTGATGAAGGATCAAATTGCAATAACAACAATAATTGGGTTCCAACTGCAATTCCAACACTTGCACCAAGGACTACTACCAGTGTGTCTCTTTGTCCACCTTTCACTTTGTTGCATGAATAG 2157 0.408 MASMNLLGFSLSPQEQHPSSTQDQTVVPSLFGFNPHDDGSGVQQGDHCFDLTSHSSTPHHLSHPFSIYDAFHTNNNIHTTQDWKENYNNQTLLLGSSCINQNGNNSHQQVQPKLENFLGGNSFTDHQNEYGGNNNNSYSSLHLPVTQPEQSCGGGGGGDDDSTNNNNNNSIGLSMIKTWLRNQPPPENNNNNETGAARVQTLSLSMSTGSQSSSSVPLLNANATNGEISSSENKQPPTTAVVLDSNQTGSIVETAAPRKSIDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGTTTTTNFPISHYEKELEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGLSAVTNFDMSRYDVKTILESSTLPIGGAAKRLKDMEQVELLSVNVVDNIGHSRAEQDHHGIINNTTNSLLTDQAMNNYAAANWHALSFQQQHPYNTNMQLQHYPYGSQTQTQKLWCKQEQDSDDHNTYTTTDHIHHQQLQLGNNHNNNNTHNFFGLQNIMSMDSASMDNSSGSNSVVYGGGDHGGYGGNNGYMIPMATTTVIGNDGSNQNQNQRSSNNSFGDSDQIKGFGYENIFGATDPYHAHARNLYYQQQQLSVDEGSNCNNNNNWVPTAIPTLAPRTTTSVSLCPPFTLLHE 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03016 718 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 105 520 - -
Vivi6g03016 718 MobiDBLite consensus disorder prediction 624 645 - -
Vivi6g03016 718 ProSiteProfiles AP2/ERF domain profile. 270 336 IPR001471 GO:0003700|GO:0006355
Vivi6g03016 718 ProSiteProfiles AP2/ERF domain profile. 372 430 IPR001471 GO:0003700|GO:0006355
Vivi6g03016 718 FunFam AP2-like ethylene-responsive transcription factor ANT 269 338 - -
Vivi6g03016 718 SMART rav1_2 372 436 IPR001471 GO:0003700|GO:0006355
Vivi6g03016 718 SMART rav1_2 270 342 IPR001471 GO:0003700|GO:0006355
Vivi6g03016 718 CDD AP2 269 338 IPR001471 GO:0003700|GO:0006355
Vivi6g03016 718 MobiDBLite consensus disorder prediction 157 171 - -
Vivi6g03016 718 FunFam AP2-like ethylene-responsive transcription factor 371 432 - -
Vivi6g03016 718 MobiDBLite consensus disorder prediction 116 171 - -
Vivi6g03016 718 Pfam AP2 domain 372 422 IPR001471 GO:0003700|GO:0006355
Vivi6g03016 718 Pfam AP2 domain 270 328 IPR001471 GO:0003700|GO:0006355
Vivi6g03016 718 CDD AP2 371 432 IPR001471 GO:0003700|GO:0006355
Vivi6g03016 718 MobiDBLite consensus disorder prediction 116 147 - -
Vivi6g03016 718 SUPERFAMILY DNA-binding domain 269 338 IPR016177 GO:0003677
Vivi6g03016 718 PRINTS Ethylene responsive element binding protein signature 412 432 IPR001471 GO:0003700|GO:0006355
Vivi6g03016 718 PRINTS Ethylene responsive element binding protein signature 271 282 IPR001471 GO:0003700|GO:0006355
Vivi6g03016 718 MobiDBLite consensus disorder prediction 1 23 - -
Vivi6g03016 718 Gene3D AP2/ERF domain 270 338 IPR036955 GO:0003700|GO:0006355
Vivi6g03016 718 Gene3D AP2/ERF domain 372 432 IPR036955 GO:0003700|GO:0006355
Vivi6g03016 718 SUPERFAMILY DNA-binding domain 371 432 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03016 Vivi-Chr6 117567535 117571406 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03016 170 457 AP2-EREBP Transcription Factor Family AT5G17430 71.181 1.69e-136 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vivi6g03016 AP2 1.7e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g03016 6 117567535 117571406 Vivi6g03016 6 117567535 117571406 ECH