Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03010 ATGGATTGTGGCGGTTTTGTTACTACACGTGACAGACATGCGAACAAGCATTCCAAGATGCAAAAATTCAACCAAGGTGAAGATATAATAAGCAAGCTACCTGACGATATCATTGTCCATATTCTTTCTTTTCTTTCTTATAAAGATGCAATCCGCACTAGTGTTTTATCACAGAGATGGATATACATGTGGACATTTCTCACAACCCTATATTTGAAAGATAAAGCTATTGTTCGGGCTTCTTATCAGATCAAAACTAGTTTTATCAACTTTGTATGCAGGCTGCTGCATCGCCTCAACGCTTCAAACATCAGTAAATTTTATCTTTCTCTTTCAGAGAAATATGACCCCTACATTTTCAGTGAGTTGATATCGCTTGTTTCAAATCAAAAAGTTAAAGAGATTTGTCTCATTTCCCTTCAAGAATGCAACATTTCATGCTACCCCATTTTCAAATGCCAGTCCTTGGAGAAATTGGTGCTATGTCTAGGTCTTTCTATTATCCAATTTCCATCTTTTGTTTGCCTTTCATCCCTCACTGTCCTGCGATTGACATCAATCAGAGATCCAATGAAAATTACTTGTTACTCCTCTAATCAGTCCAAAGAGTTAACACTTAAATTCCCGGTTCTTAAAGATTATTACTCATGTGATTGCATTTGGTTAGGTGTAAAACGTGTTACTATAGAAGCGCCTCTACTTGAAGAGATTAAAATAATTCGTCAATGGTTTATGACGTCCAATGTTTCACAGGCAGAAATTGAGATTCGGGCTTCTTCTGTTACAGAATATTGTTATAGTAGCTATATATCATCAGAGACCACTTTGCTAGACGCTGCACACGTTGCTGACGCTTCCATTTGTCTAAGTGATTCAAATGTAGAGAAGACTGGCGAACAAATGCAGATTTTTGTTCGTAAACTTTTCAATATCAATAATTTGAAATGTTTACGAGTCTTTCTGGATCTTGCACCAATGAAACATTATTTGGCTGGTATTCATACATTTGAAATACTGAGTTATCTGCATCTATATTACCCTGTCACCATTAAAAATTTGTTAGTCTTACTTTTAAAATCACCATGTCTGGAGACTCTAGTTTTACAGCGAGTAATAGATTCAAAAACAGAACCTCCAAATTTCGCGATAGTACCGGAATATTTTCTATCTACTCTCAAAGTGATATGGTGCCCCCCGAAGCTGCCCGAAGCTGTTGTAAAGGTTTCAGATAAGGTGAATGACAATGTTAGGCCGGATGAGGTGAAGGACGAGGTTAAAATGATTGATGTCGAGATATATGTTCGACAAAAATTTATAAATGATCAAATTTTCAGTGATCGTCAACATATGCTTGAATGGGTCCGAATGGAAGCTAGCAAACTCGGGTTTGGCATTGTGATTGGAAGTTCCAACAATGACACTAGTAGAAGGCAAACATTTGTAACAATGAGATGCAAGAGAAATGTAAAATATGTTCCAAAAATTCGGAACTTAAAACATGTTGACACCAGATCGAGAAAATGTGAGTGTTTATTTAAATTGCGCGGATATTGTACGGTGGATGATATCTGGCAGTTTGATGTCATTTCTGGTATACATAATCATGCGTTGGACACCAAGCTTTAA 1626 0.3672 MDCGGFVTTRDRHANKHSKMQKFNQGEDIISKLPDDIIVHILSFLSYKDAIRTSVLSQRWIYMWTFLTTLYLKDKAIVRASYQIKTSFINFVCRLLHRLNASNISKFYLSLSEKYDPYIFSELISLVSNQKVKEICLISLQECNISCYPIFKCQSLEKLVLCLGLSIIQFPSFVCLSSLTVLRLTSIRDPMKITCYSSNQSKELTLKFPVLKDYYSCDCIWLGVKRVTIEAPLLEEIKIIRQWFMTSNVSQAEIEIRASSVTEYCYSSYISSETTLLDAAHVADASICLSDSNVEKTGEQMQIFVRKLFNINNLKCLRVFLDLAPMKHYLAGIHTFEILSYLHLYYPVTIKNLLVLLLKSPCLETLVLQRVIDSKTEPPNFAIVPEYFLSTLKVIWCPPKLPEAVVKVSDKVNDNVRPDEVKDEVKMIDVEIYVRQKFINDQIFSDRQHMLEWVRMEASKLGFGIVIGSSNNDTSRRQTFVTMRCKRNVKYVPKIRNLKHVDTRSRKCECLFKLRGYCTVDDIWQFDVISGIHNHALDTKL 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03010 541 ProSiteProfiles F-box domain profile. 27 60 IPR001810 GO:0005515
Vivi6g03010 541 PANTHER F-BOX/RNI SUPERFAMILY PROTEIN-RELATED 28 395 - -
Vivi6g03010 541 CDD F-box_AtFBL13-like 30 65 - -
Vivi6g03010 541 Pfam F-box domain 30 60 IPR001810 GO:0005515
Vivi6g03010 541 Gene3D - 12 65 - -
Vivi6g03010 541 SUPERFAMILY F-box domain 26 101 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03010 Vivi-Chr6 117466405 117477368 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03010 28 74 EF-hand Containing Proteins AT5G41840 48.936 4.68e-06 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vivi6g03010 F-box 6.8e-06 CL0271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03010 - - vvo:131614493 1084.32