Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g02989 ATGAAAAATGATTGTTTGTATATGCGATTGTATTTTAGTGACAAGTCACAATTGATTCCACAACTTCCCCAGCCACGTAAATCAAAATTTTTCCACTATTTAGACTCAGCCATTTCATTTTCACTTTCGGAATTCCGCCGCGCTCGCAACGCCGCATCGCTCAATCGCCGCCGCATCGTTCTCCATTACAAGCACCTATTTGCAGAGTCAGAAATGGACAAGAAATTTCTAGTACCACTCTGCATTCTTTTGATGCTTCTCTCTGTTAAAGCTGCTCCTCGAAGATCTCTCGTCACACATCTTCCTGGTTATTCTGGCAATTTCCTCTCCCACCATTACTCAGGATATGTGAGTATTGATGGAAATGCTGAGACTGGAAAGAACATGTTCTACTACTTTGTTAGTTCAGAAAGAAATCCCAGAAAAGATCCTGTTGTTCTATGGTTGAATGGTGGACCTGGTTGTTCTAGCTTTGATGGATTTGTTTATGAACATGGACCATTCAATTTCAAGGCTGCAGAATCAAAAGAGAACCTGCCCACTTTGCATGACAATCCTTACAGCTGGTCTAAGGTTTCCAACGTTTTATATTTGGATTCACCAACTGGTGTTGGGTTCTCTTACTCAAAGAACATAAGCAAATATTCAACTGGGGACCTACAAACAGCTTCGGATACTCATGCTTTCCTCTTAAAATGGTTTGAACAATTTCCAGAATTCCAGGCTAATCCATTTTATATTTCTGGAGAGTCTTATGCTGGAATTTATGTACCCACTCTAGCTTTTGAAATTGCTAAAGGAATCCAAAGTGGAACAAAGCCCGCGATCAATTTGAAGGGTTACTTAGTAGGAAATGGTGTCACGGACCCAAAATTTGACAACAATGCTTTTATCCCATTTGTGCATGGGATGGGCCTCATATCAGACACTATCTATGAGAATGTGCATGCCTCTTGCAAAGAAAACTACTACAATTCTGATTCTCAGAGTGATCAATGTGCTAAGAGCATGGAAATAGTTAGTAAGGCTATTCAAGGGCTTAATGTGTACAATATATTAGAGCCATGCCACCATGAACCAGAAGTTGCAACAAACTTAAGTTCTAATTTGCCATTGAGTTTCCAAAATTTAGGGTTAACAGAGAGACCTCTCCCAGTAAGAAAGAGGATGTTTGGTAGAGCATGGCCTTTCAGAGCACCGGTTAGAGATGGTCCTGTTACCTTATGGCCTCAATTATTAGCCAACACCAAACACGTACCTTGTGTCAGCGATGAAGTAGCAACATCATGGCTGAACAACCCTGCGGTCAGAAAAGCCATTCATGTTGACGTGGCAAGTGGTACGTGGGAATTATGTACTGATAGGATAAGTTTCGATCATGATGCTGGAAGCATGATTCCTTACCACAAAAATCTAACAAAATTGGGCTATCGAGCACTTATTTACAGTGGTGACCATGATATGTGTGTGCCATTTACTGGAAGTGAAGCTTGGACAAGTTCTTTGGGATACAGAACTGTGGATGAATGGAGATCATGGATCTCTAATGACCAAGTTGCTGGGTTCTTACAATCTTACGAGCACAACCTTACCTTCCTCACAGTGAAGGGGGCTGGGCACACTGTGCCGGAATATAAGCCAAAGGAGGCACTGGATTTTTACAGCCGTTGGTTGGATGGAAAATTCATTTAA 1692 0.4143 MKNDCLYMRLYFSDKSQLIPQLPQPRKSKFFHYLDSAISFSLSEFRRARNAASLNRRRIVLHYKHLFAESEMDKKFLVPLCILLMLLSVKAAPRRSLVTHLPGYSGNFLSHHYSGYVSIDGNAETGKNMFYYFVSSERNPRKDPVVLWLNGGPGCSSFDGFVYEHGPFNFKAAESKENLPTLHDNPYSWSKVSNVLYLDSPTGVGFSYSKNISKYSTGDLQTASDTHAFLLKWFEQFPEFQANPFYISGESYAGIYVPTLAFEIAKGIQSGTKPAINLKGYLVGNGVTDPKFDNNAFIPFVHGMGLISDTIYENVHASCKENYYNSDSQSDQCAKSMEIVSKAIQGLNVYNILEPCHHEPEVATNLSSNLPLSFQNLGLTERPLPVRKRMFGRAWPFRAPVRDGPVTLWPQLLANTKHVPCVSDEVATSWLNNPAVRKAIHVDVASGTWELCTDRISFDHDAGSMIPYHKNLTKLGYRALIYSGDHDMCVPFTGSEAWTSSLGYRTVDEWRSWISNDQVAGFLQSYEHNLTFLTVKGAGHTVPEYKPKEALDFYSRWLDGKFI 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g02989 563 Gene3D alpha/beta hydrolase 90 377 IPR029058 -
Vivi6g02989 563 SUPERFAMILY alpha/beta-Hydrolases 98 561 IPR029058 -
Vivi6g02989 563 ProSitePatterns Serine carboxypeptidases, histidine active site. 530 547 IPR033124 GO:0004185
Vivi6g02989 563 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 97 547 IPR001563 GO:0004185|GO:0006508
Vivi6g02989 563 FunFam Carboxypeptidase 465 560 - -
Vivi6g02989 563 PRINTS Carboxypeptidase C serine protease (S10) family signature 185 197 IPR001563 GO:0004185|GO:0006508
Vivi6g02989 563 PRINTS Carboxypeptidase C serine protease (S10) family signature 233 258 IPR001563 GO:0004185|GO:0006508
Vivi6g02989 563 PRINTS Carboxypeptidase C serine protease (S10) family signature 530 543 IPR001563 GO:0004185|GO:0006508
Vivi6g02989 563 PRINTS Carboxypeptidase C serine protease (S10) family signature 198 208 IPR001563 GO:0004185|GO:0006508
Vivi6g02989 563 Pfam Serine carboxypeptidase 102 560 IPR001563 GO:0004185|GO:0006508
Vivi6g02989 563 Gene3D - 417 562 - -
Vivi6g02989 563 FunFam Carboxypeptidase 91 377 - -
Vivi6g02989 563 ProSitePatterns Serine carboxypeptidases, serine active site. 247 254 IPR018202 GO:0004185
Vivi6g02989 563 FunFam Carboxypeptidase 420 562 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g02989 Vivi-Chr6 117301192 117311362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g02989 426 561 Calmodulin-binding Proteins AT2G22960 47.445 8.67e-40 141