Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g02985 ATGGCAAGACCATTAGCAAAAATATGTGACATCAATGACAGCAAAGAACTTTGGAAAGTTTCTGTTCGTGTGCACCACAAATGGACAGTTGTTTCGAACAAGAGGGAGCATTTTGAGATGATTTTTGTTGATGTATCGGGTGGTGACATACATGTTGTTGTTCCTGCACCGCATGTATCTCTTTTTTTTGAAAAAATGGTCTTGGATCATAGTTACACTGTTTCCAATTTTAAGGTTCAGGCTAATGTTGCGGCTTTCAGACCTTCGTCTCATAAGTTTATGTTGAAGTTTACTGCTGGCACTACGGTTACGGATGATAACAACGCTGAAATACCTCCAAAGTCGTTGGTGTTTACTAAATTTACTGATATAATAAACGGCAACTTTAACAAGGATGTGCTAATAGATGTCATTGGTATGGTGGAAAGTATTGGGTATTCACAGACCACATCAGGTGCCCGGAAGCAGCAGATTAACATGATGCTGCGTGACGGGGGGTTTGTTTTCATATTTATTTTCAAGCAGGAGCGCGGAGATGATTCTGGTCCTATTTTTGTCATGATTCAATATGCTAAAGTCAAGGAACAGGGTAAGTTTCCACTGTCCGTGACAAACACGTTTAATGTTACCGTCCTTGGTCTGAATACTGATTTATTGCCGATGAAAGAGTTTATAGAAAGTTTTCCGAAGGATTCCATGATTACGTTGTCTGGCCAGGAGGGTTCCAATTCACAGCTTTCAGCACAGAACTCTGAAAATCAACAGATGACTCCTGTACAAAAATTGCTTTCAAAGGCTGTTGTAATGCCTATTGGGGATATTATAAAACTCAGAACTGAATGTTTGGAAGTTATTACATTTTGTGCGACTGTGGGAGAAACTAAAATGCTGGTTGCCTCTCCGTATGGCTGGTATTATCGTGGTTGTCATGCTTGCTCATGTATTGCGCGTGGTGACAGAGCTCCATTTGAGTGTGAGGCTGGACATTTCACTGAGGCAGAGATTTTTAGGTATAAGATTGAGATTGAGGTTACTCATGCCGGGAATAGCTGTAACTTTTTATTTTGGGACCGAGAGTGTGAGTTACTTTTGGGATTGTCTGCTTCTCAGCTGCGTCATACAATGATTAAGGCTGGCATTCATGATCCCTTGGAATTCCCACTGGCATTAGATCAGATGTTGGATTGCAAGATGGCTTTCAAAGTTAAGTGGCAACCACGTTGGAAGAATGCCTCTGTCGTTATGCTATTGAAGAATGACCCTTTTGTGAAAGAGCTTGCTGATCAGTTTGACCCAGATGAGATGAAACAGCCTGCTGTCGAAGCAATGACCACTGTTCGATCCGAACCTAATTTTGTCGTCGTAAGGACGTTTACTGATCTTGATTTCAACGATGATGTTGCAGACATGTTACGACAGACAAAGCTTATAATATGGGATGAGCCACCAATGGCGCATAAGTATGCAATAGAATCGCTTACCAGAACTTTGAAAGATTTTATGAGTGCAAACAAAAATTCAACTGATGTATTTGGTGGAAAGGTTGTTGTTTTCGGTAGCGATTTCAGATAG 1572 0.409 MARPLAKICDINDSKELWKVSVRVHHKWTVVSNKREHFEMIFVDVSGGDIHVVVPAPHVSLFFEKMVLDHSYTVSNFKVQANVAAFRPSSHKFMLKFTAGTTVTDDNNAEIPPKSLVFTKFTDIINGNFNKDVLIDVIGMVESIGYSQTTSGARKQQINMMLRDGGFVFIFIFKQERGDDSGPIFVMIQYAKVKEQGKFPLSVTNTFNVTVLGLNTDLLPMKEFIESFPKDSMITLSGQEGSNSQLSAQNSENQQMTPVQKLLSKAVVMPIGDIIKLRTECLEVITFCATVGETKMLVASPYGWYYRGCHACSCIARGDRAPFECEAGHFTEAEIFRYKIEIEVTHAGNSCNFLFWDRECELLLGLSASQLRHTMIKAGIHDPLEFPLALDQMLDCKMAFKVKWQPRWKNASVVMLLKNDPFVKELADQFDPDEMKQPAVEAMTTVRSEPNFVVVRTFTDLDFNDDVADMLRQTKLIIWDEPPMAHKYAIESLTRTLKDFMSANKNSTDVFGGKVVVFGSDFR 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g02985 523 PANTHER UNCHARACTERIZED 465 523 - -
Vivi6g02985 523 Gene3D - 109 233 IPR012340 -
Vivi6g02985 523 Pfam PIF1-like helicase 464 523 IPR010285 GO:0000723|GO:0003678|GO:0006281
Vivi6g02985 523 SUPERFAMILY Nucleic acid-binding proteins 300 408 IPR012340 -
Vivi6g02985 523 Gene3D - 3 105 IPR012340 -
Vivi6g02985 523 SUPERFAMILY Nucleic acid-binding proteins 4 104 IPR012340 -
Vivi6g02985 523 Pfam Domain of unknown function DUF223 39 134 IPR003871 -
Vivi6g02985 523 CDD RPA1_DBD_A_like 19 103 - -
Vivi6g02985 523 Gene3D - 241 420 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g02985 Vivi-Chr6 117156399 117159854 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g02985 8 403 Core DNA Replication Machinery Family AT5G45400 21.991 8.72e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g02985 - - vvo:131628318 964.526