Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g02972 ATGGACAAGAAATTTCTAGTACCACTCTGCATTCTTTTGATGCTTCTCTCTGTTAAAGCTGCTCCTCGAAGATCTCTCGTCACACATCTTCCTGGTTATTCTGGCAATTTCCTCTCCCACCATTACTCAGGATATGTAAGTATTGATGGAAATGCTGAGACTGGAAAGAACATGTTCTACTACTTTGTTAGTTCAGAAAGAAATCCCAGAAAAGATCCTGTTGTTCTATGGTTGAATGGTGGACCTGGTTGTTCTAGCTTTGATGGGTTTGTTTATGAACATGGACCATTCAATTTCAAGGCTGCAGAATCAAAAGAGAACCTGCCCACTTTGCATGACAATCCTTACAGCTGGTCTAAGGTTTCCAACGTTTTATATTTGGATTCACCAACTGGTGTTGGGTTCTCTTACTCAAAGAACATAAGCAAATATTCAACTGGGGACCTACAAACAGCTTCGGATACTCATGCTTTCCTCTTAAAATGGTTTGAACAATTTCCAGAATTCCAGGCTAATCCATTTTATATTTCTGGAGAGTCTTATGCTGGAATTTATGTACCCACTCTAGCTTTTGAAATTGCTAAAGGAATCCAAAGTGGAACAAAGCCAGTGATCAATTTGAAGGGTTACTTGGTAGGAAATGGTGTCACGGACCCAAAATTTGACAACAATGCTTTTATCCCATTTGTGCATGGGATGGGCCTCATATCAGACACTATCTATGAGAATGTACATGCTTCTTGCAAAGAAAACTACTACAATTCTGATTCTCAGAGTGATCAATGTGCTAAGAGCATGGAAATAGTTAGTAAGGCTATTCAAGGGCTTAATGTGTACAATATATTAGAACCATGCCACCATGAACCAGAAGTTGCAACAAACTTAAGTTCTAATTTACCATTGAGTTTCCAAAATTTAGGGTTAACAGAGAGACCTCTCCCAGTAAGAAAGAGGATGTTTGGTAGAGCTTGGCCTTTCAGAGCACCAGTTAGAGATGGTCCTGTTACATTATGGCCTCAATTATTAGCCAACACCAAACACGTCCCTTGCGTCAGTGATGAAGTAGCAACATCGTGGCTAAACAACCCTGCGGTCAGGAAAGCCATTCATGTTGACGTGGCAAGTGGTACGTGGGAATTATGTACTGATAGGATAAGTTTCGATCATGATGCTGGAAGCATGATTCCTTACCATAAAAATCTAACAAAATTGGGCTATCGAGCACTTATTTACAGTGGTGACCATGATATGTGTGTACCATTTACTGGAAGTGAAGCTTGGACAAGTTCTTTGGGATACAGAACTGTGGATGAATGGAGATCATGGATCTCTAATGACCAAGTTGCTGGGTTCTTACAATCTTACGAGCACAACCTTACCTTCCTCACAGTGAAGGGGGCTGGGCACACCGTACCGGAATATAAGCCAAAGGAGGCACTCGATTTTTACAGCCGTTGGTTGGATGGAAAATTCATTTAA 1479 0.4077 MDKKFLVPLCILLMLLSVKAAPRRSLVTHLPGYSGNFLSHHYSGYVSIDGNAETGKNMFYYFVSSERNPRKDPVVLWLNGGPGCSSFDGFVYEHGPFNFKAAESKENLPTLHDNPYSWSKVSNVLYLDSPTGVGFSYSKNISKYSTGDLQTASDTHAFLLKWFEQFPEFQANPFYISGESYAGIYVPTLAFEIAKGIQSGTKPVINLKGYLVGNGVTDPKFDNNAFIPFVHGMGLISDTIYENVHASCKENYYNSDSQSDQCAKSMEIVSKAIQGLNVYNILEPCHHEPEVATNLSSNLPLSFQNLGLTERPLPVRKRMFGRAWPFRAPVRDGPVTLWPQLLANTKHVPCVSDEVATSWLNNPAVRKAIHVDVASGTWELCTDRISFDHDAGSMIPYHKNLTKLGYRALIYSGDHDMCVPFTGSEAWTSSLGYRTVDEWRSWISNDQVAGFLQSYEHNLTFLTVKGAGHTVPEYKPKEALDFYSRWLDGKFI 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g02972 492 ProSitePatterns Serine carboxypeptidases, serine active site. 176 183 IPR018202 GO:0004185
Vivi6g02972 492 Gene3D - 346 491 - -
Vivi6g02972 492 PRINTS Carboxypeptidase C serine protease (S10) family signature 114 126 IPR001563 GO:0004185|GO:0006508
Vivi6g02972 492 PRINTS Carboxypeptidase C serine protease (S10) family signature 127 137 IPR001563 GO:0004185|GO:0006508
Vivi6g02972 492 PRINTS Carboxypeptidase C serine protease (S10) family signature 459 472 IPR001563 GO:0004185|GO:0006508
Vivi6g02972 492 PRINTS Carboxypeptidase C serine protease (S10) family signature 162 187 IPR001563 GO:0004185|GO:0006508
Vivi6g02972 492 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 26 476 IPR001563 GO:0004185|GO:0006508
Vivi6g02972 492 ProSitePatterns Serine carboxypeptidases, histidine active site. 459 476 IPR033124 GO:0004185
Vivi6g02972 492 Gene3D alpha/beta hydrolase 19 306 IPR029058 -
Vivi6g02972 492 FunFam Carboxypeptidase 349 491 - -
Vivi6g02972 492 FunFam Carboxypeptidase 394 489 - -
Vivi6g02972 492 FunFam Carboxypeptidase 20 306 - -
Vivi6g02972 492 Pfam Serine carboxypeptidase 31 489 IPR001563 GO:0004185|GO:0006508
Vivi6g02972 492 SUPERFAMILY alpha/beta-Hydrolases 27 490 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g02972 Vivi-Chr6 116944823 116953771 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g02972 355 490 Calmodulin-binding Proteins AT2G22960 47.445 3.75e-40 141