Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g02961 ATGGGAATGATTGTAGAAGTTGAAACCGTCGATGAAGACGGCGACGTTTTGGTTGCACCGCCTAATTTCTCCATGGTCGAAGATTGCATTTACCGATCTAGCCTTCCTCAGCCTCCCAATTTTCCGTTTCTTCAAACGCTAAACCTTCGCTCCATCATATACTTGTGTCCTGAACCCTATCCGGAAGAGAATTTGGAGTTTCTGAAGTCACAGAATATTCGCTTATTTCAATTTGGAATTGAGGGGAAAACGGAAGTTTCTTTACCTATTCTTAAGGATTCTATTATGGAGGCTTTGAAAGTTTTACTTGATGTGAGAAATCACCCTGTTTTGATTCATTGCAAACGAGGAAAGCATAGAACAGGTTGCGTAGTTGGTTGCTTCAGAAAGTTGCAGAATTGGTGTTTGTCTTCTGTGTTCGAGGAGTATCAGCGATATGCTGGAGCTAAATCCCGGACAGCGGATTTAACATTTATAGAGATGTTTGACATCATATCTCTTAGGCAGTGCCTCTACAGCATCATCTACCAGTACCAAGGTGCTTCAAAGAAGCGCAGATTGATGTATCAAGGCGAGCCTACGCAGAAACCACCCCGTTTGACATCATTTTAG 612 0.4248 MGMIVEVETVDEDGDVLVAPPNFSMVEDCIYRSSLPQPPNFPFLQTLNLRSIIYLCPEPYPEENLEFLKSQNIRLFQFGIEGKTEVSLPILKDSIMEALKVLLDVRNHPVLIHCKRGKHRTGCVVGCFRKLQNWCLSSVFEEYQRYAGAKSRTADLTFIEMFDIISLRQCLYSIIYQYQGASKKRRLMYQGEPTQKPPRLTSF 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g02961 203 ProSitePatterns Tyrosine specific protein phosphatases active site. 112 122 IPR016130 GO:0016311|GO:0016791
Vivi6g02961 203 Pfam Tyrosine phosphatase family 17 164 IPR004861 -
Vivi6g02961 203 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 18 164 IPR029021 -
Vivi6g02961 203 CDD PFA-DSP_Siw14 17 163 - -
Vivi6g02961 203 Gene3D Protein tyrosine phosphatase superfamily 16 166 IPR029021 -
Vivi6g02961 203 PANTHER TYROSINE-PROTEIN PHOSPHATASE 15 176 - -
Vivi6g02961 203 ProSiteProfiles Dual specificity protein phosphatase domain profile. 22 173 IPR020422 GO:0006470|GO:0008138
Vivi6g02961 203 PRINTS Plant and fungal dual specificity phosphatase signature 17 34 IPR020428 GO:0016791
Vivi6g02961 203 PRINTS Plant and fungal dual specificity phosphatase signature 90 104 IPR020428 GO:0016791
Vivi6g02961 203 PRINTS Plant and fungal dual specificity phosphatase signature 73 87 IPR020428 GO:0016791
Vivi6g02961 203 PRINTS Plant and fungal dual specificity phosphatase signature 54 67 IPR020428 GO:0016791
Vivi6g02961 203 FunFam probable tyrosine-protein phosphatase At1g05000 16 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g02961 Vivi-Chr6 116879384 116881372 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g02961 3 197 Protein tyrosine phosphatase (PTP) family AT3G02800 67.857 8.00e-99 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g02961 K18045 - gmx:100787713 336.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g02961 6 116879384 116881372 Vivi6g02961 6 116879384 116881372 ECH