Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g02954 ATGTGGCAAATGAACTTGAGATCAAGTGAAACAATGGAATCAGGACCTTATCCTGAGCATCCAGGAGAACCAGATTGTTCATATTACATCAGAACTGGTCTTTGTAGATTTGGAGCGACATGTCGATTTAATCATCCTCCTAACAGGAAGCTGGCTATTGCCACTGCACGGATGAAAGGCGAGTTCCCAGAGAGGTTAGGGCAGCCAGAATGTCAGTACTATCTGAAAACAGGTACTTGCAAATTTGGTGCCACGTGCAGGTTTCATCATCCTAAAGACAAGGCTGGGGTTGCTGGAAGAGTTGCCTTGAACATTTTAGGCTATCCACTCCGCCCAAATGAGTCTGAATGTGCTTATTATTTAAGAACTGGTCAATGCAAGTTTGGGAACACTTGCAAATTTCATCATCCTCAACCAAGTAATATGGTACTATCAATGAGGGGTTCGACTGTTTATCCTACTGTCCAATCTCCAACTACACCTGGTCAGCAGTCATATGCGGCAGGAATTACAAATTGGTCTAGTTCATCCTATGTTCCTAGTCCAAGGTGGCAAGGTCCTTCAAGTTATGCACCCTTAATTCTACCTCAAGGAGTGGTTTCAGTGCCTGGGTGGAATACATACAGTGGTCAAATGGGATCAGACAGTCCACAACAAACAATAAGAAATGATCAAACCTATGGAACTTCTCACCAAGGTGAATTAGAAAATGCAGGACTCCAAGGGGCATATTCTCAATACCGTTCTGGCTCTGTTCCAGTAGGATTCTATGCTTTGCAAAGGGATAACATTTTTCCAGAGAGACCTGATCAGCCAGAATGCCAATTCTACATGAAGACCGGAGATTGCAAGTTCGGTGCAGTTTGTCGTTTTCACCATCCAAGAGAGAGGCAGATCCCTGCCCCGGATTGTGTTTTGAGTCCCATTGGCCTTCCTTTGCGTCCTGGAGAACCTCTGTGTGTATTTTATTCACGGTATGGCATATGCAAATTTGGCCCAAGTTGCAAGTTTGATCACCCAATGGGAATTTTCGCCTATAATGTAGCTGCATCACCTTTAGCTGATGTCCCAGGCAGGCGTCTGTTAGGCTCTTCATCTGGAACTGCTGCATTAAGTTTATCATCAGAAGGACTTGTTGAGTCGGGGACAGCAAACCCAAGGAGGCTTTCATTGTCAGAAACTAGACCGATTCCTTCCGGTGATGATAACATTGATGACGAGGGATAA 1227 0.4466 MWQMNLRSSETMESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIATARMKGEFPERLGQPECQYYLKTGTCKFGATCRFHHPKDKAGVAGRVALNILGYPLRPNESECAYYLRTGQCKFGNTCKFHHPQPSNMVLSMRGSTVYPTVQSPTTPGQQSYAAGITNWSSSSYVPSPRWQGPSSYAPLILPQGVVSVPGWNTYSGQMGSDSPQQTIRNDQTYGTSHQGELENAGLQGAYSQYRSGSVPVGFYALQRDNIFPERPDQPECQFYMKTGDCKFGAVCRFHHPRERQIPAPDCVLSPIGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGIFAYNVAASPLADVPGRRLLGSSSGTAALSLSSEGLVESGTANPRRLSLSETRPIPSGDDNIDDEG 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g02954 408 MobiDBLite consensus disorder prediction 1 20 - -
Vivi6g02954 408 SUPERFAMILY CCCH zinc finger 25 48 IPR036855 GO:0046872
Vivi6g02954 408 Gene3D - 96 144 - -
Vivi6g02954 408 SMART c3hfinal6 65 92 IPR000571 GO:0046872
Vivi6g02954 408 SMART c3hfinal6 268 295 IPR000571 GO:0046872
Vivi6g02954 408 SMART c3hfinal6 20 47 IPR000571 GO:0046872
Vivi6g02954 408 SMART c3hfinal6 314 341 IPR000571 GO:0046872
Vivi6g02954 408 SMART c3hfinal6 111 138 IPR000571 GO:0046872
Vivi6g02954 408 SUPERFAMILY CCCH zinc finger 317 341 IPR036855 GO:0046872
Vivi6g02954 408 Gene3D - 19 95 - -
Vivi6g02954 408 MobiDBLite consensus disorder prediction 375 408 - -
Vivi6g02954 408 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 22 47 IPR000571 GO:0046872
Vivi6g02954 408 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 114 138 IPR000571 GO:0046872
Vivi6g02954 408 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 316 341 IPR000571 GO:0046872
Vivi6g02954 408 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 67 92 IPR000571 GO:0046872
Vivi6g02954 408 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 270 295 IPR000571 GO:0046872
Vivi6g02954 408 ProSiteProfiles Zinc finger C3H1-type profile. 65 93 IPR000571 GO:0046872
Vivi6g02954 408 SUPERFAMILY CCCH zinc finger 69 94 IPR036855 GO:0046872
Vivi6g02954 408 FunFam Zinc finger nuclease 2 19 96 - -
Vivi6g02954 408 ProSiteProfiles Zinc finger C3H1-type profile. 111 139 IPR000571 GO:0046872
Vivi6g02954 408 FunFam CCCH type zinc finger protein 266 351 - -
Vivi6g02954 408 ProSiteProfiles Zinc finger C3H1-type profile. 314 342 IPR000571 GO:0046872
Vivi6g02954 408 Gene3D - 261 342 - -
Vivi6g02954 408 SUPERFAMILY CCCH zinc finger 271 296 IPR036855 GO:0046872
Vivi6g02954 408 PANTHER PROTEIN PHOSPHATASE RELATED 8 362 - -
Vivi6g02954 408 MobiDBLite consensus disorder prediction 375 392 - -
Vivi6g02954 408 SUPERFAMILY CCCH zinc finger 112 139 IPR036855 GO:0046872
Vivi6g02954 408 ProSiteProfiles Zinc finger C3H1-type profile. 268 296 IPR000571 GO:0046872
Vivi6g02954 408 ProSiteProfiles Zinc finger C3H1-type profile. 21 48 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g02954 Vivi-Chr6 116710689 116717146 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g02954 1 406 C2H2 Transcription Factor Family AT3G02830 62.954 7.77e-179 501
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi6g02954 zf-CCCH 4.9e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g02954 - - gmx:100786261 786.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g02954 6 116710689 116717146 Vivi6g02954 6 116710689 116717146 ECH