Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g02946 ATGGTTTCCCTCTCAACCAACCCTTTCTTTCACCTCACTCCACAAAAAAATACTCCCCCTTCTACTAGATTCCATCCCACAAACAACAACGCCAATCCACTCCATAACAACAACAACAACAAGCACTGTAATAAAATTCGCAGAAAAGTTGTTTGTGCTTGCATCGCTCCTCCACGTAATTTCAACTCCCAAGACTCTTCCGCCATTCAATTCAATGGTTCATCCAAATCAGAACAGTTAAACACAATTCGGGATAATGACGATGATTCTGATGTTCTTATCGAGTGTAGAGACGTATACAAGTCTTTTGGGGAAAAGAAAATCTTAAATGGTATCAGCTTCAAGATCAGGCATGGTGAAGCTGTTGGAATAATTGGTCCCTCTGGGACTGGCAAATCTACAATTTTGAAGATTATAGCGGGACTTCTTGCTCCGGACAAGGGAGAAGTTTATATTCGAGGTAGAAAGAGAAGTGGTTTGATAAGTGATGACGAGATATCGGGTCTTCGGATTGGATTAGTGTTCCAAAGTGCGGCACTTTTTGATTCTTTGACTGTTCGTGAAAATGTTGGTTTTCTCTTGTATGAACACTCAAGCATGCCTGAGGAACAGATATCAGAGCTTGTGAAGGAAACCTTGGCTGCAGTTGGTTTAAAGGGAGTTGAGGAGCGGCTTCCTTCTGAGTTATCAGGCGGAATGAAAAAGCGAGTTGCTTTAGCTCGATCTATTATTTGTGACACCACAAAGGATTCAATAGAACCAGAGGTGCTCTTATATGACGAGCCAACTGCTGGACTTGATCCCATCGCATCTACCGTTGTTGAAGATCTGATTCGCTCTGTCCACATAAAAGGACGAGATGCACTTGGAAAACCCGGTAATATTACATCTTATGTGGTTGTTACTCACCAACACAGTACCATTAAAAGAGCCATTGATAGGTTGTTATTTTTACACAAGGGAAAGGTTGTTTGGGAAGGAATGACTAACGAATTTACTACTTCAACTAATCCAATTGTTCAGCAGTTTGCATCCGGGAGCCTAGATGGTCCTATCAAATATTAG 1065 0.415 MVSLSTNPFFHLTPQKNTPPSTRFHPTNNNANPLHNNNNNKHCNKIRRKVVCACIAPPRNFNSQDSSAIQFNGSSKSEQLNTIRDNDDDSDVLIECRDVYKSFGEKKILNGISFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRSGLISDDEISGLRIGLVFQSAALFDSLTVRENVGFLLYEHSSMPEEQISELVKETLAAVGLKGVEERLPSELSGGMKKRVALARSIICDTTKDSIEPEVLLYDEPTAGLDPIASTVVEDLIRSVHIKGRDALGKPGNITSYVVVTHQHSTIKRAIDRLLFLHKGKVVWEGMTNEFTTSTNPIVQQFASGSLDGPIKY 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g02946 354 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 94 345 IPR003439 GO:0005524
Vivi6g02946 354 Pfam ABC transporter 109 264 IPR003439 GO:0005524
Vivi6g02946 354 SMART AAA_5 118 322 IPR003593 GO:0016887
Vivi6g02946 354 Gene3D - 80 346 IPR027417 -
Vivi6g02946 354 PANTHER PROTEIN TRIGALACTOSYLDIACYLGLYCEROL 3, CHLOROPLASTIC 35 354 - -
Vivi6g02946 354 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 92 335 IPR027417 -
Vivi6g02946 354 CDD ABC_Org_Solvent_Resistant 94 343 - -
Vivi6g02946 354 ProSitePatterns ABC transporters family signature. 229 243 IPR017871 GO:0005524|GO:0016887
Vivi6g02946 354 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g02946 Vivi-Chr6 116586116 116590655 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g02946 100 327 Calmodulin-binding Proteins AT2G36910 29.388 2.12e-15 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g02946 - - gmx:100783283 575.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g02946 6 116586116 116590655 Vivi6g02946 6 116586116 116590655 ECH